BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0027.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313130|ref|YP_003777222.1| thiosulfate sulfurtransferase [...   352   1e-98

>gi|300313130|ref|YP_003777222.1| thiosulfate sulfurtransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score =  352 bits (904), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/285 (62%), Positives = 198/285 (69%), Gaps = 48/285 (16%)

Query: 1   MTYATLISAADLAAHLDDANWLVIDCRHDLANPDAGAQAYAAGHVPQARFAHLDKILSGA 60
           M Y TLISA++L A     N +++DCRHDLANPD G QAYAAGH+PQARFAHLD++LSG 
Sbjct: 1   MIYQTLISASELKARAAHINLVIVDCRHDLANPDFGRQAYAAGHLPQARFAHLDELLSGP 60

Query: 61  KNGADGKFKGRHPLPERQAFIDAMQELGVGKGTQVVAYDAHGGMFAARLWWLLRWVGHVQ 120
           K  A G+F GRHPLP+RQ F+ AM+ LG+   TQVVAYDAHGGMFAARLWWLLRW+GH  
Sbjct: 61  KTDAAGRFHGRHPLPDRQQFVQAMRALGINNDTQVVAYDAHGGMFAARLWWLLRWIGHSD 120

Query: 121 VAVLDGGLPAWX------------------------------------------------ 132
           VAVLDGG+ AW                                                 
Sbjct: 121 VAVLDGGMAAWQAIGEPLSAETPAPATPGSIQDLTSLVQTVDAQALVENIKTQALQVIDA 180

Query: 133 RAADRYRGENETLDAVGGHIPGAKNRFFKDNLGADGRFKSADALRAEWNALIDSPQAAVM 192
           RA DR+RGENETLDAVGGHIPGAKNRFFKDNL ADGRFK A  LR EW  L+  PQAAVM
Sbjct: 181 RAPDRFRGENETLDAVGGHIPGAKNRFFKDNLQADGRFKGAAQLREEWLTLLGDPQAAVM 240

Query: 193 QCGSGVTACHNLLALEVAGLPGARLYPGSWSEWSSDSSRPVATGA 237
           QCGSGVTACHNLLALEVAGL GARLYPGSWSEWSS+  RPVATG+
Sbjct: 241 QCGSGVTACHNLLALEVAGLAGARLYPGSWSEWSSNPQRPVATGS 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 819,904
Number of extensions: 38128
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)