BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0026.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DM...   490   e-140
gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DM...    63   3e-11

>gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  490 bits (1261), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/302 (77%), Positives = 273/302 (90%), Gaps = 2/302 (0%)

Query: 1   MLVASFLFSIMGVCVKLSSDYYSTAEVVLCRGIVGVAFIYGLVKIRGGTLRTPYPRDHLI 60
           MLVASFLFSIMGVCVKL+SDYYST+E+VLCRG++G++ I  LV++RGGT RTP+PRDHLI
Sbjct: 6   MLVASFLFSIMGVCVKLASDYYSTSEIVLCRGLIGISVIAALVRVRGGTFRTPFPRDHLI 65

Query: 61  RGGVGVISLWLWFYSFGLLPVATATTLNYMSSIWIAAMLFGVAWWQGKKRFEWGLAGTVL 120
           RGGVGVISLWLWFYSF LLPVATATTLNYMSSIWIA MLF  AWWQG K+FEWGLA TV+
Sbjct: 66  RGGVGVISLWLWFYSFSLLPVATATTLNYMSSIWIAVMLFAAAWWQGNKKFEWGLAATVV 125

Query: 121 LSFVGVAMLLRPSIDSDQLLGGLIALFSGVLSALVYLQVRKLGLLGEPEYRVVFYFSFTG 180
           LSF+GVA+L+RPS+D+DQLLGG I+LFSGVLSALVYLQVRKLGLLGEPEYRVVFYFS TG
Sbjct: 126 LSFIGVALLMRPSLDADQLLGGAISLFSGVLSALVYLQVRKLGLLGEPEYRVVFYFSLTG 185

Query: 181 LLAGLAGSVVIGRIPFWHAHSAKGLALLVTIGLTATLAQIAMTRAYRLGNTLVTANLQYT 240
           +LAGL GSV  GR+P WH+HS +G AL++ IGLTATLAQIAMTRAYRLGNTLVTANLQYT
Sbjct: 186 VLAGLVGSVATGRVPLWHSHSWQGAALVIMIGLTATLAQIAMTRAYRLGNTLVTANLQYT 245

Query: 241 GIVFASLWGLFIWNDAPGWMGWTGIAIILMSGVVSTFYNQRSQQQSRQSRNLPAIDPIAT 300
           GIVF+SL+G+ +WNDAPGW+GW G+ +IL SG+++T++N RS Q +  +RNLP +DPIAT
Sbjct: 246 GIVFSSLFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQIA--ARNLPKVDPIAT 303

Query: 301 EV 302
           EV
Sbjct: 304 EV 305


>gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 112/245 (45%), Gaps = 25/245 (10%)

Query: 61  RGGVGVISLWLWFYSFGLLPVATATTLNYMSSIWIAAMLFGVAWWQGKKRF--EWGLAGT 118
           RG + + S  ++F    ++P+A  T +N+ + + + A+     W  G++ +   W     
Sbjct: 89  RGALLLGSTLIFFSVLKIVPLAEGTAMNFCAPLIVLAI---SPWLLGERSYLSRWI---A 142

Query: 119 VLLSFVGVAMLLRPSIDSDQLLGGLIALFSGVLSALVYLQVRKLGLLGEPEYRVVFYFSF 178
           VL+ F G+ +++RPS D     G  + L S +  AL+ +  RK      P   +     F
Sbjct: 143 VLVGFTGMLIVIRPSGDIPPY-GVALGLISALTQALLSILNRKASQADNPMVTL-----F 196

Query: 179 TGLLAGLAGSVVIGRIPF-WHAHSAK--GLALLVTIGLTATLAQIAMTRAYRLGNTLVTA 235
            G L G   S ++  +PF W +H+     LA+LV+ G+T+T+       AYR     V  
Sbjct: 197 YGALVGSVVSTLL--VPFFWTSHTPTMVELAILVSTGITSTIGHFLQNSAYRHAEASVLT 254

Query: 236 NLQYTGIVFASLWGLFIWNDAPGWMGWTGIAIILMSGVVSTFYNQRSQQQSRQSRNLPAI 295
              Y  I+ A   G  ++   P  +   GIAII  SG+   +       + +++  LP  
Sbjct: 255 PFFYAQIISACGMGWLVFGQFPDRVTVLGIAIICASGIGIAYI------EHKRAHPLPPA 308

Query: 296 DPIAT 300
           DP+ +
Sbjct: 309 DPMES 313


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 949,639
Number of extensions: 41843
Number of successful extensions: 200
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)