BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0023.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313126|ref|YP_003777218.1| geranyltranstransferase [Herbas...   422   e-119
gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase ...    97   1e-21

>gi|300313126|ref|YP_003777218.1| geranyltranstransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  422 bits (1086), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/288 (77%), Positives = 245/288 (85%), Gaps = 7/288 (2%)

Query: 1   MEGTLDAYLSAVTEIPARLHQAMRYSALDGGKRVRPLLVYAAGELFDAPEQLLGRAAAAV 60
           ME  L+ +L + + +PARLH+AMRY+A+DGGKRVRPLLVYAAGELFD P  LL RAAAAV
Sbjct: 23  MEEVLNRFLPSASVVPARLHEAMRYTAMDGGKRVRPLLVYAAGELFDTPRALLERAAAAV 82

Query: 61  EMIHVYSLVHDDMPCMDDDALRRGKPTVHVRYDEPTALLVGDALQAQAFAVLSENIEEQH 120
           EMIHVYSLVHDDMPCMDDDALRRGKPTVH+RYDE TALLVGDALQAQAF  L+  +E + 
Sbjct: 83  EMIHVYSLVHDDMPCMDDDALRRGKPTVHIRYDEATALLVGDALQAQAFDTLAAPLESEA 142

Query: 121 AP-------RQLKMLNLLAQAAGSTGMCGGQAIDLASVGMTLSLAELEQMHRLKTGALLR 173
                    RQL+M+ LLA+AAGS GMCGGQAIDLASVGMTLSLAELEQMHRLKTGALLR
Sbjct: 143 GSADAGLPARQLRMVKLLAEAAGSVGMCGGQAIDLASVGMTLSLAELEQMHRLKTGALLR 202

Query: 174 AAILLGACSGKNLTVAEQAALEAYSCPISLAFQVVDDILDATADSATLGKTAGKDAADNK 233
           AA+LLGA  GK LT AE AAL+ Y+  I LAFQVVDDILDATADSATLGKTAGKDAADNK
Sbjct: 203 AAVLLGALGGKALTAAESAALDDYARAIGLAFQVVDDILDATADSATLGKTAGKDAADNK 262

Query: 234 PTYVSILGLSESQALAEKLRNDAHKALEQFGDKARRLHELADLIVQRK 281
           PTYVSILGL+ESQALA +L+ DAH+AL  FG KARRL ELADLIVQRK
Sbjct: 263 PTYVSILGLAESQALAGRLQADAHEALAPFGGKARRLRELADLIVQRK 310


>gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 20/227 (8%)

Query: 13  TEIPARLHQAMRYSALDGGKRVRPLLVYAAGELFDAPEQLLGRAAAAVEMIHVYSLVHDD 72
           +E+P  ++Q   Y    GGKR+RP+LV      F    +     AA +E IH  +L+HDD
Sbjct: 14  SEVPL-VNQVAEYIISAGGKRLRPVLVVLIANAFGYKGEHHHSLAAVIEFIHTATLLHDD 72

Query: 73  MPCMDDDALRRGKPTVHVRYDEPTALLVGDALQAQAFAVLSENIEEQHAPRQLKMLNLLA 132
           +  +D+ +LRRGK T +  +    ++LVGD L ++AF ++        A    +++ ++A
Sbjct: 73  V--VDESSLRRGKQTANAMFGNAASVLVGDFLYSRAFQMMV-------AVGNPRVMEIVA 123

Query: 133 QAAGSTGMCGGQAIDLASV-GMTLSLAELEQMHRLKTGALLRAAILLGACSGKNLTVAEQ 191
            A  +  +  G+ + L ++    +      Q+ R KT  L  AA  +GA     +  A++
Sbjct: 124 DA--TNVIAEGEVLQLLNMHNPDVDENGYLQVIRSKTAKLFEAASQIGAL----IAGADE 177

Query: 192 AALEA---YSCPISLAFQVVDDILDATADSATLGKTAGKDAADNKPT 235
           A +EA   Y   I  AFQ++DD+LD + +SA +GK  G D  + KPT
Sbjct: 178 AGIEAAAEYGRSIGTAFQLIDDVLDYSGNSAEIGKNVGDDLREGKPT 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 807,890
Number of extensions: 31583
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)