BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0022.p
         (450 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate ...   760   0.0  
gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subun...    64   2e-11

>gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 621

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/418 (86%), Positives = 392/418 (93%), Gaps = 2/418 (0%)

Query: 1   MLNTINSPADLRQLPRTQLKPLADELRAFILDSVSKTGGHLSSNLGTVELTIALHYVFNT 60
           +LNTIN PADLR+L R QLKPLA+ELR F+LDSVSKTGGHLSSNLGTVELTIALHYVFNT
Sbjct: 2   LLNTINDPADLRRLSRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFNT 61

Query: 61  PEDRIVWDVGHQTYPHKILTGRRDQMSTLRQLDGISGFPRRAESEHDTFGTAHSSTSISA 120
           PEDR+VWDVGHQTYPHKILTGRR++M TLRQ +GISGFPRR ES++DTFGTAHSSTSISA
Sbjct: 62  PEDRVVWDVGHQTYPHKILTGRRERMDTLRQQEGISGFPRRIESQYDTFGTAHSSTSISA 121

Query: 121 ALGMALAAKTKGEDRHAIAVXLAADGAMTAGMAFEAMNNAGISEDVNLLVILNDNDMSIS 180
           ALGMALAA+T+G DRHAIAV    DGAMTAGMAFEA+NNAG+ EDV LLVILNDNDMSIS
Sbjct: 122 ALGMALAARTQGSDRHAIAVI--GDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSIS 179

Query: 181 PPVGALNRYLARLMSGQFYAKAKNVGKSMLPGPMLELAKRFEEHAKGMIVPATMFEEFGF 240
           PPVGALNRYLARLMSG+FYA+A++VGKS+LPGP+LELAKR EEHAKGM+VPATMFEEFGF
Sbjct: 180 PPVGALNRYLARLMSGKFYARARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGF 239

Query: 241 NYIGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTRKGQGYKLAEADPVLYHGPGKFNPAE 300
           NYIGPIDGHDLDSL+PTLQNLK+LKGPQFLHVVT+KGQGYKLAEADPVLYHGPGKFNP+E
Sbjct: 240 NYIGPIDGHDLDSLVPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSE 299

Query: 301 GIKPAAASKQTYTQVFGEWLCDMAAQDKTLVGITPAMREGSGMVSFEQKFPDRYYDVGIA 360
           GIKP+A  K TYT+VFG+WLCDMAA D  LVGITPAMREGSGMV FE+KFP+RYYDVGIA
Sbjct: 300 GIKPSAGGKLTYTKVFGDWLCDMAAADDKLVGITPAMREGSGMVDFEKKFPNRYYDVGIA 359

Query: 361 EQHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGXQNLD 418
           EQHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAG    D
Sbjct: 360 EQHAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGAD 417


>gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 1/105 (0%)

Query: 305 AAASKQTYTQVFGEWLCDMAAQDKTLVGITPAMREGSGMVSFEQKFPDRYYDVGIAEQHA 364
           AA  ++     FG+ L D AA    +VG+T  + + + +  F++ +P+R++ +G+AEQ  
Sbjct: 21  AAEGQRVQAAPFGKALVDYAADRPEIVGLTADLAKYTDLHLFQKAYPERFFQMGMAEQLL 80

Query: 365 VTFAAGMACEGMKPVVAIYSTF-LQRAYDQLIHDVALQNLDVTFA 408
           +  A GMA EG+ P    Y+ F  +RAYD +   +A +NL+V   
Sbjct: 81  MAAAGGMAKEGLVPFATTYAVFATRRAYDFIHQVIAEENLNVKIC 125


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,474,512
Number of extensions: 62690
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 450
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,203,190
Effective search space: 435554780
Effective search space used: 435554780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)