BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0021.p
         (156 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313124|ref|YP_003777216.1| hypothetical protein Hsero_3830...   187   3e-49

>gi|300313124|ref|YP_003777216.1| hypothetical protein Hsero_3830
           [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  187 bits (475), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/153 (64%), Positives = 117/153 (76%)

Query: 1   MGNRLSKIATRTGDDGSTGLGDGSRIAKDAPRIHALGEVDELNSQLGLLLCEDLPAGVRE 60
           MGNRLSKIATRTGDDGSTGLGDGSR+ KD  RI ALG+VDELNSQLGLLLCE LPA +RE
Sbjct: 2   MGNRLSKIATRTGDDGSTGLGDGSRVGKDNLRIQALGDVDELNSQLGLLLCESLPAALRE 61

Query: 61  ELLAIQHDLFDLGGELCIPGYSVIADAQVAQLDALLEKHNTDLPPLKEFFXGPLFLSSSL 120
           EL++IQHDLFDLGGELCIPGY+V+ADA +A+LDALLEK+N  LPPLKEF       +++L
Sbjct: 62  ELVSIQHDLFDLGGELCIPGYTVLADAHLARLDALLEKYNATLPPLKEFILPGGSRTAAL 121

Query: 121 QRVQPLLTTRRGWSLPKRCTMEAAMPSLSRPHL 153
             V   +  R   S+      EA + + +R +L
Sbjct: 122 AHVCRTVCRRAERSVVMLEKAEAGVNAPARQYL 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 363,940
Number of extensions: 10916
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,250,540
Effective search space: 97542120
Effective search space used: 97542120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)