BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0019.p (263 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313122|ref|YP_003777214.1| transcription regulator protein... 484 e-138 gi|300314051|ref|YP_003778143.1| transcription regulator protein... 165 4e-42 gi|300310443|ref|YP_003774535.1| LysR family transcription regul... 135 5e-33 gi|300309845|ref|YP_003773937.1| LysR family transcription regul... 133 1e-32 gi|300310906|ref|YP_003774998.1| LysR family transcription regul... 119 2e-28 >gi|300313122|ref|YP_003777214.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 484 bits (1245), Expect = e-138, Method: Compositional matrix adjust. Identities = 235/259 (90%), Positives = 248/259 (95%) Query: 1 MATRLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSI 60 MATRLPPVHALSAFEAAARHNSFA+AAEELCITPSALSHRIRLLEEFVGERLF+RDGRSI Sbjct: 1 MATRLPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEEFVGERLFYRDGRSI 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRY 120 GLSEFGRRYLDVVRSALRTLTDFPMPHRNA VQPK+K+MLPPTFARHLL+PRIA+FTQR+ Sbjct: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRH 120 Query: 121 PDITVEMYLSVPLYDLSLSESDVEIRFGAGNYPNFVTEKLFEEPAFAVASPAYLKTIPPL 180 P+I VE+YLSVPLYDLSLSESDVEIRFGAGNYPN +TEKLFEEPAFAVASPAYLKT+PP+ Sbjct: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPAYLKTLPPM 180 Query: 181 KGPQDLLHANLLRSALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGLTR 240 K P DL A LLRSALEPWQPWFEAAGLKDW EPS GLRVDDLGLLLE+VRHGYGVGLTR Sbjct: 181 KSPADLKQATLLRSALEPWQPWFEAAGLKDWVEPSAGLRVDDLGLLLEAVRHGYGVGLTR 240 Query: 241 QHFAEELLARGEIVELFXI 259 QHFAEELLARGEIVELF I Sbjct: 241 QHFAEELLARGEIVELFDI 259 >gi|300314051|ref|YP_003778143.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 165 bits (417), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 104/258 (40%), Positives = 150/258 (58%), Gaps = 3/258 (1%) Query: 4 RLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSIGLS 63 +LP + AL AF+AAAR+ F+ AAEE+ +TP A+SH++R LEE +G +LF R G+ I ++ Sbjct: 6 KLPNLAALRAFDAAARYECFSRAAEEVHVTPGAISHQVRALEEDLGLQLFLRHGKRISIT 65 Query: 64 EFGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRYPDI 123 E G+R+ +R +L + R+ Q ++ I P+FA L PR+ F +P++ Sbjct: 66 ETGQRFAATIRKSLSEIALAAEHLRSQNRQQRLVISTTPSFASRWLAPRLWRFIDAHPEL 125 Query: 124 TVEMYLSVPLYDLSLSESDVEIRFGAGNYPNFVTEKLFEEPAFAVASPAYL-KTIPPLKG 182 V + + L DL L DV +RFG GNY V+EKL ++ + VA+P Y K L Sbjct: 126 EVVLQSAAHLNDLRLDGIDVGLRFGRGNYSGLVSEKLSDDYYYPVAAPGYRGKRSKKLAR 185 Query: 183 PQDLLHANLLR-SALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGLTRQ 241 P DL H +LLR + E WQPW AGL + PEP+ GL V+D L L G GV L R Sbjct: 186 PADLAHCSLLRVDSRESWQPWLAEAGL-ELPEPTGGLLVEDSSLTLRQAAEGKGVALARH 244 Query: 242 HFAEELLARGEIVELFXI 259 A + ++ GE+V LF + Sbjct: 245 VIASQEISTGELVRLFDV 262 >gi|300310443|ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 135 bits (339), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 89/260 (34%), Positives = 134/260 (51%), Gaps = 5/260 (1%) Query: 5 LPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSIGLSE 64 LPP+ L AFEA AR SFA+AA EL +T SA+SH++ LE ++G RLF R + ++ Sbjct: 4 LPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVRITT 63 Query: 65 FGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRYPDIT 124 G YL ++ A+ +T M R V + I P+ A L+ R+ +F + YP+IT Sbjct: 64 AGEAYLARIQGAISAITAASMDVRQG-VSNTLYIHSAPSIASLWLMARLNDFARSYPEIT 122 Query: 125 VEMYLSVPLYDLSLSESDVEIRFGAGNYPNFVTEKLFEEPAFAVASPAYLKTIPPLKGPQ 184 + + + L E D++IR+G N+P V E LFEE +ASPA+++ L+ P Sbjct: 123 FNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREY-RLRKPA 181 Query: 185 DLLHANLLRS--ALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGLTRQH 242 DLL L+RS ++ W WF PE +R D + L++ G GV L Sbjct: 182 DLLGVKLIRSNVSVVQWADWFGEFADVRAPE-QFAVRFDRAQMSLDAATQGLGVALESAT 240 Query: 243 FAEELLARGEIVELFXIHDA 262 A L ++ +F + A Sbjct: 241 VAARHLEEKKLKPIFGLERA 260 >gi|300309845|ref|YP_003773937.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 133 bits (335), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 134/255 (52%), Gaps = 5/255 (1%) Query: 5 LPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSIGLSE 64 +PP+ +L AFEA AR SF +AA EL +TPSA+SH++ LE+ +G RLF R + + L+ Sbjct: 2 IPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTP 61 Query: 65 FGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRYPDIT 124 G+ YL+ V AL + R+ V+ ++I P+FA L+PRI FTQR+PDI Sbjct: 62 AGQSYLNRVAGALGAINSATDDLRHG-VENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 Query: 125 VEMYLSVPLYDLSLSESDVEIRFGAGNYPNFVTEKLFEEPAFAVASPAYLKTIPPLKGPQ 184 + + S + D + + D++IR G ++P+ E + E +ASP +L + P Sbjct: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLAR-HRIDTPD 179 Query: 185 DLLHANLL--RSALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGLTRQH 242 DL+ A L+ R +L W WF PE LR D + +E+ G GV Sbjct: 180 DLVLAPLIQSRGSLLQWPEWFARYAPDLRPE-RIALRFDRAMMSIEAAVQGLGVVFESDA 238 Query: 243 FAEELLARGEIVELF 257 F LA G + +F Sbjct: 239 FGAVALASGRLQPVF 253 >gi|300310906|ref|YP_003774998.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/256 (33%), Positives = 128/256 (50%), Gaps = 3/256 (1%) Query: 1 MATRLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEEFVGERLFFRDGRSI 60 MA P++A+ AF AAARH SF +AA EL +T A+S +I+ LE ++G LF R R + Sbjct: 1 MADLTLPLNAIRAFLAAARHQSFTLAAHELNVTHGAISRQIKNLEGYLGMPLFERRTRQV 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNATVQPKVKIMLPPTFARHLLVPRIAEFTQRY 120 L+E GR++ + AL L + V I + P+FA L+P +++F +RY Sbjct: 61 LLTERGRQFFEEASPALEILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERY 120 Query: 121 PDITVEMYLSVPLYDLSLSESDVEIRFGAGNYP-NFVTEKLFEEPAFAVASPAYLKTIPP 179 P I ++ S + S D+ +R G N+P ++ E+ VASPA L+ +P Sbjct: 121 PGIAPQVVTSTATVGKAGSSFDIAVRRGETNWPETLKVQRFMEDELVLVASPALLQAMPL 180 Query: 180 LKGPQDLLHANLL-RSALEPWQPWFEAAGLKDWPEPSTGLRVDDLGLLLESVRHGYGVGL 238 H LL RS W+ W + AGLK L D + +L++V G GV L Sbjct: 181 EDVSGLARHTVLLSRSRRNDWEDWRKLAGLKR-SRSQAMLHFDHVHFVLQAVVDGLGVAL 239 Query: 239 TRQHFAEELLARGEIV 254 + A+ L G +V Sbjct: 240 SPVSLADNDLRSGRLV 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 844,015 Number of extensions: 36067 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 43 Length of query: 263 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 180 Effective length of database: 1,226,865 Effective search space: 220835700 Effective search space used: 220835700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)