BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0017.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313120|ref|YP_003777212.1| glycolate oxidase iron-sulfur s...   469   e-133
gi|300313123|ref|YP_003777215.1| D-lactate dehydrogenase [Herbas...    62   6e-11
gi|300312605|ref|YP_003776697.1| FAD/FMN-containing dehydrogenas...    57   1e-09

>gi|300313120|ref|YP_003777212.1| glycolate oxidase iron-sulfur
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  469 bits (1207), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/315 (73%), Positives = 263/315 (83%), Gaps = 2/315 (0%)

Query: 1   VLDTRPYSGIIDYEPTELVITARCGTPLSEIDAALAANNQVLAFEPPRFGGVSTVGGMIA 60
           +LDTR YSGIIDYEPTELVITARCGTPLSEIDAALA +NQ+LA+EPP FGG +TVGGM+A
Sbjct: 45  LLDTRAYSGIIDYEPTELVITARCGTPLSEIDAALAQHNQMLAWEPPSFGGAATVGGMVA 104

Query: 61  TGLSGPGRQASGSVRDFVLGADLMDAQGQVLHFGGQVMKNVAGYDVSRLLTGSLGTLGLI 120
            GLSGP R ++G+VRDFVLGA LMDAQG+ LHFGGQVMKNVAGYD+SRLL GSLGTLGLI
Sbjct: 105 AGLSGPARASAGAVRDFVLGAVLMDAQGEPLHFGGQVMKNVAGYDISRLLAGSLGTLGLI 164

Query: 121 LQASIKVLPQAFATSTRVFEVDQANAIRLLNEWGGQPLPLSASAWVNGVLTIRLSGAQAA 180
           L+ S+KVLP+  A+STRVFE++Q  A+RLLN+  GQPLPL ASAWV  VLTIRLSGAQAA
Sbjct: 165 LEVSLKVLPRPIASSTRVFEINQEGALRLLNQSAGQPLPLVASAWVGNVLTIRLSGAQAA 224

Query: 181 VSAAETKLGGTELTNGEDFWRDLREQNHAFFADVDAPLWRISLPSVAQPLALNGMQLIEW 240
           V +A  KLGGTEL+N +D+W DLREQ H FFAD +APLWR+SLPSVA P+ L G QLIEW
Sbjct: 225 VDSAIAKLGGTELSNPDDYWTDLREQTHPFFADAEAPLWRLSLPSVAAPIDLPGRQLIEW 284

Query: 241 GGAQRWYR--GDDGVAVIRAAATAAGGHASLYRGGDKSVGVFQPLAPAVAKIHRNLKASF 298
           GGAQRW R  G+     IRAAA A GGHASL+RGGDK++GVF PL PAV  +HR LK  F
Sbjct: 285 GGAQRWLRPEGNVDAVTIRAAALAVGGHASLHRGGDKAIGVFHPLQPAVETLHRRLKQQF 344

Query: 299 DPSGIFNPGRMYSEF 313
           DP GIFNPGR+Y+  
Sbjct: 345 DPQGIFNPGRLYASL 359


>gi|300313123|ref|YP_003777215.1| D-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 3/137 (2%)

Query: 2   LDTRPYSGIIDYEPTELVITARCGTPLSEIDAALAANNQVLAFEPPRFGGVSTVGGMIAT 61
           +D    + ++     +L  T + G    +++  +         +P   G  +++GGM +T
Sbjct: 100 VDLSQMNQVLAVHAEDLTATVQAGVTRKQLNQEIKDTGLFFPIDP---GADASLGGMAST 156

Query: 62  GLSGPGRQASGSVRDFVLGADLMDAQGQVLHFGGQVMKNVAGYDVSRLLTGSLGTLGLIL 121
             SG      G++++  L   ++ AQG+++  G +  K+ AGYD++R+  GS GTLG+I 
Sbjct: 157 RASGTNAVRYGTMKENTLTLTVVTAQGEIIKTGTRAKKSSAGYDLTRVYVGSEGTLGIIT 216

Query: 122 QASIKVLPQAFATSTRV 138
           + ++++ PQ  A S  +
Sbjct: 217 EVTVRLYPQPEAISAAI 233


>gi|300312605|ref|YP_003776697.1| FAD/FMN-containing dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 1   VLDTRPYSGIIDYEPTELVITARCGTPLSEIDAALAANNQV----LAFEPPRFGGVSTVG 56
           VL  R  + I   +     IT   G  L  +    AA  ++    LA E     G  T+G
Sbjct: 95  VLSLRRLNRIRAVDALNNTITVESGCVLQHLQEQAAAAGRLFPLSLAAE-----GSCTIG 149

Query: 57  GMIATGLSGPGRQASGSVRDFVLGADLMDAQGQVLHFGGQVMKNVAGYDVSRLLTGSLGT 116
           G ++T   G G    G+ R+  LG +++ AQG+++     + K+  GYD+  L  G+ GT
Sbjct: 150 GNLSTNAGGTGVLRYGNTRELCLGLEVVTAQGEIMSSLKGLRKDNTGYDLRDLFIGAEGT 209

Query: 117 LGLILQASIKVLPQAFATST 136
           LG+I  A +K+ PQ  A  T
Sbjct: 210 LGVITAAVMKLFPQPRAQVT 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 997,564
Number of extensions: 41325
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 3
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)