BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0014.p
         (188 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822...   311   2e-86
gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469...    62   3e-11

>gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  311 bits (797), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 149/175 (85%), Positives = 163/175 (93%)

Query: 13  GFVEVRKFLHAGQQSYPRTLDLEANPAEELRITLQPGTKVGAALREVLQRYGQRGGVGRM 72
           GF+EVRKFLHAGQ SYPRTLDLEA+PAEELRITLQ GT VG ALR VL RYGQRGGVGR+
Sbjct: 5   GFLEVRKFLHAGQPSYPRTLDLEADPAEELRITLQAGTLVGPALRRVLARYGQRGGVGRL 64

Query: 73  CGGTARKLHYHRIENTRDANRPYDYGLPHVLEGVITFVTGAITVGQNQEGKVLLHCHAGF 132
           CGGTAR+LHYHRIE T DA+RPYDYG PHVLEGVI+FVTGAIT+GQN +GKVLLHCH+GF
Sbjct: 65  CGGTARRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCHSGF 124

Query: 133 LDGDGSIHGGHLLLDTVEVGDDPLIIRLCLFSQGAFVVNSDEETLFSLLHPTPME 187
           +DGDG++HGGHLLLDTVEVGDDPLI+RLCLFS+ AFVVNSDEET FSLLHPTPME
Sbjct: 125 IDGDGTLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPTPME 179


>gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469
           [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score = 62.0 bits (149), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 3/167 (1%)

Query: 18  RKFLHAGQQSYPRTLDLEANPAEELRITLQPGTKVGAALREVLQRYGQRGGVGRMCGGTA 77
           R   H G     R + L A PA +L  TL+ G  +  A+   L R G  GG  R      
Sbjct: 9   RTVRHPGAPDPQRIVSL-AGPAMQLDFTLEAGRNLRDAISIPLSRAGLEGGTVRFGQLAI 67

Query: 78  RKLHYHRIENTRDANRPYDYGLPHVLEGVITFVTGAITVGQNQEGKVLLHCHAGFLDGDG 137
            +LH+       D      Y  PH +E          T G+ ++G+  +HCHA + D  G
Sbjct: 68  AELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGR-KDGEPFVHCHAVWRDRQG 126

Query: 138 SIHGGHLLLDTVEVGDDPLIIRLCLFSQGAFVVNSDEETLFSLLHPT 184
              GGHL+++   VG D       L          D ET F+L +PT
Sbjct: 127 QRQGGHLMMEKTLVGADTPAQAWGLHD-ATMATRYDPETNFTLFYPT 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 589,402
Number of extensions: 23090
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 188
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,241,070
Effective search space: 134035560
Effective search space used: 134035560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)