BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0011.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313114|ref|YP_003777206.1| acetyl-CoA acetyltransferase [H...   702   0.0  

>gi|300313114|ref|YP_003777206.1| acetyl-CoA acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 393

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/399 (84%), Positives = 366/399 (91%), Gaps = 6/399 (1%)

Query: 1   MTAHMTASSPCITGWNHSQFGKLDGIDPEALIGQVAKAAIEHAGLTPEDIGSIHIGTFNG 60
           MTA  +ASSPCITGW+HSQFGKLDGIDPE LIGQVAKAAIEHAGL PEDI S+H+GTFN 
Sbjct: 1   MTA--SASSPCITGWHHSQFGKLDGIDPEVLIGQVAKAAIEHAGLQPEDIDSVHVGTFNA 58

Query: 61  GFLYQDFPSSLVFNTLPELRFKPAVRVENACATGSAAIHSGMQSILSGQAKHALVIGFEK 120
           GFLYQDFPSSLV NTLP+LRFKPA R+ENACATGSAAIHSG+Q+I +G++KH LVIGFEK
Sbjct: 59  GFLYQDFPSSLVLNTLPQLRFKPATRLENACATGSAAIHSGLQAIKAGESKHVLVIGFEK 118

Query: 121 MTELATPQVGEVLLKCCYAKEEAGIPGGFAGVFGKIAQAYFDRYGDQSDALAAIAAKNHK 180
           MTELATPQVGEVLLK CYAKEEAGIPGGFAGVFGKIAQ+YFDR+GDQSDALA IAAKNHK
Sbjct: 119 MTELATPQVGEVLLKACYAKEEAGIPGGFAGVFGKIAQSYFDRFGDQSDALAMIAAKNHK 178

Query: 181 NGMSNPYAHMRKDFGFDFCRNVSEKNPFVAGPLKRTDCSLISDGAAALILSAADVAKTMQ 240
           NGM NPYAHMRKDFGF+FCRNVS+KNP+VAGPLKRTDCSLISDGAAAL++SAADVAK M 
Sbjct: 179 NGMVNPYAHMRKDFGFEFCRNVSDKNPYVAGPLKRTDCSLISDGAAALVISAADVAKAMP 238

Query: 241 RAVTFRAAVHVNDFLPLSRRDPTRFEAGTLAWQQALKQADLKLLDLSLVETHDCFTIAEL 300
           RAV FRAAVHVNDFLPLSRRDPTRFEA  LAW++AL  A L L DLSLVETHDCFT+AEL
Sbjct: 239 RAVQFRAAVHVNDFLPLSRRDPTRFEAAELAWKKALGDASLTLNDLSLVETHDCFTVAEL 298

Query: 301 LEYEAMGLAEPGQKAXARARAILDGVTAKNGRLPINPSGGLKSKGHPVGATGVSMHVMAA 360
           LEYEAMGLA  GQ     AR I +G+TAK+G+LP+NPSGGLKSKGHPVGATGVSMHVMAA
Sbjct: 299 LEYEAMGLAPHGQG----ARVIAEGITAKDGKLPVNPSGGLKSKGHPVGATGVSMHVMAA 354

Query: 361 MQASHDAGDMQIPNARYAGVFNMGGAAVANYVSILERVH 399
           MQA+HDAGDMQI NARYAGVFNMGGAAVANYVSILERV+
Sbjct: 355 MQAAHDAGDMQIANARYAGVFNMGGAAVANYVSILERVN 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,185,294
Number of extensions: 47876
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)