BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0008.p
         (373 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310351|ref|YP_003774443.1| sugar ABC transporter periplasm...    56   5e-09

>gi|300310351|ref|YP_003774443.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 14/195 (7%)

Query: 150 RQADGVAFMALEHPLVREAVNTLVAEGIPVVTLISDLSNSRRAAYVAAGRTA--GYLLGR 207
           ++ D +A ++++ P +   +   +  GI VVT  +D   +      A   TA    L  R
Sbjct: 86  KKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNTAYGARLNDR 145

Query: 208 FLGGAGNAKAKPMKVAMIAGSLSYRGHEEREMGFLHVLEEMFPHLQVVGLR-EGHDDADT 266
                G A     K + + GSL  +   +   G      + +P + +V  + E  +DA+ 
Sbjct: 146 LAACMGQAG----KWSSLVGSLGSQSQVQWADGGAANAAKKYPKMTLVDAKNESANDAEK 201

Query: 267 NYKQARTLLEQYPDLVGMYNIGGASD----GVGRALRESGREQKVVFIGHGLTPDTRGLL 322
            Y +A+ +L ++PD+ G     G+S     G+GRA+ E+G + KV   G GL  +    L
Sbjct: 202 AYAKAKEILRKHPDIKGFQ---GSSSLDVLGIGRAVEEAGLQGKVCVYGTGLPSEAAKFL 258

Query: 323 IDGTVDAILTQHPQN 337
             G V  I    P++
Sbjct: 259 ESGAVGGIAFWDPKD 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,140,455
Number of extensions: 48248
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 3
Length of query: 373
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 286
Effective length of database: 1,207,925
Effective search space: 345466550
Effective search space used: 345466550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)