BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0005.p
         (101 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313112|ref|YP_003777204.1| TRAP-type C4-dicarboxylate tran...   117   1e-28
gi|300310441|ref|YP_003774533.1| TRAP-type C4-dicarboxylate tran...    96   5e-22
gi|300309847|ref|YP_003773939.1| TRAP-type C4-dicarboxylate tran...    96   5e-22
gi|300310178|ref|YP_003774270.1| TRAP-type C4-dicarboxylate tran...    54   2e-09

>gi|300313112|ref|YP_003777204.1| TRAP-type C4-dicarboxylate
           transport system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 344

 Score =  117 bits (294), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/63 (85%), Positives = 59/63 (93%)

Query: 1   MKLRVPPSPLATSLFRAFDAAPTSINFAEVYSALQTKIAEGQENPLAVISTVKFYEVQKY 60
           MKLRVPPSPL TS+F+AFDAAPTSINFAEVYSALQTKI EGQENP+A+IST K YEVQKY
Sbjct: 180 MKLRVPPSPLWTSMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKY 239

Query: 61  CSM 63
           CS+
Sbjct: 240 CSI 242


>gi|300310441|ref|YP_003774533.1| TRAP-type C4-dicarboxylate
           transport system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 348

 Score = 95.9 bits (237), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 53/63 (84%)

Query: 1   MKLRVPPSPLATSLFRAFDAAPTSINFAEVYSALQTKIAEGQENPLAVISTVKFYEVQKY 60
           +KLRVP +P+ TSLF A  A+PT INF EVYS+LQTK+ EGQENPLA+IST + YEVQK+
Sbjct: 184 LKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKF 243

Query: 61  CSM 63
           C++
Sbjct: 244 CTI 246


>gi|300309847|ref|YP_003773939.1| TRAP-type C4-dicarboxylate
           transport system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 345

 Score = 95.9 bits (237), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 53/63 (84%)

Query: 1   MKLRVPPSPLATSLFRAFDAAPTSINFAEVYSALQTKIAEGQENPLAVISTVKFYEVQKY 60
           +KLRVP +P+ TSLF A  A+PT INF EVYS+LQTK+ EGQENPLA+IST + YEVQK+
Sbjct: 181 LKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKF 240

Query: 61  CSM 63
           C++
Sbjct: 241 CTI 243


>gi|300310178|ref|YP_003774270.1| TRAP-type C4-dicarboxylate
           transport system periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 334

 Score = 53.9 bits (128), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 40/63 (63%)

Query: 1   MKLRVPPSPLATSLFRAFDAAPTSINFAEVYSALQTKIAEGQENPLAVISTVKFYEVQKY 60
           +K+R+  S +  +  RA  A P  + F+EVY ALQT + +G ENP + + T K +EVQK+
Sbjct: 166 LKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKH 225

Query: 61  CSM 63
            ++
Sbjct: 226 VTV 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.128    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 262,792
Number of extensions: 6631
Number of successful extensions: 12
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 4
Length of query: 101
Length of database: 1,619,870
Length adjustment: 70
Effective length of query: 31
Effective length of database: 1,288,420
Effective search space: 39941020
Effective search space used: 39941020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)