BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0004.p
         (369 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate tran...   299   2e-82
gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease, d...   130   1e-31

>gi|300313111|ref|YP_003777203.1| TRAP-type C4-dicarboxylate
           transport system dctQ-M fusion permease large permease
           [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score =  299 bits (766), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/214 (75%), Positives = 183/214 (85%), Gaps = 4/214 (1%)

Query: 1   MDAAMTEVRLPSASAPTNPLARLLAGVNRGVMHVVAAVAAALVVVETGVLLAGVIYRYAL 60
           M+AAMT      A    NP+AR L  +NR VMH+V AVAAALV+ ET VLL GVIYRYAL
Sbjct: 2   MEAAMTY----RAPVNMNPVARALVALNRMVMHLVGAVAAALVLAETVVLLTGVIYRYAL 57

Query: 61  HDPLIWSDELASTLFIWLSMLGAVLALDRGEHMRLTAIVNKLSDKWRVWLETVAALIVCI 120
           HDPL+WSDELAS LFIWLSMLGAVLALDRGEHMRLTAI+NK S+K R+WLETVAAL+VCI
Sbjct: 58  HDPLVWSDELASILFIWLSMLGAVLALDRGEHMRLTAIINKCSEKGRIWLETVAALVVCI 117

Query: 121 FVLMIIHPAVDHASEQMAITTPALEIPDGLRAAALPVGAILMFLAAIARMASRSSVRQVL 180
           FVLM+IHPAVDHA EQM ITTPALEIPDGLRAAALPVGAILM LAA++RMA+ +++R +L
Sbjct: 118 FVLMVIHPAVDHAVEQMPITTPALEIPDGLRAAALPVGAILMLLAAVSRMAAMTTMRLLL 177

Query: 181 SAVAVVAVIGAVLWICKPALLAMGNYNLIVFFVV 214
           SA+AVVAVIG  LW+ KP LL MGNYNLIVFFV+
Sbjct: 178 SALAVVAVIGGALWLAKPMLLGMGNYNLIVFFVL 211


>gi|300310440|ref|YP_003774532.1| TrapT dctQ-M fusion permease,
           dicarboxylate transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 618

 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 121/174 (69%), Gaps = 1/174 (0%)

Query: 39  AAALVVVETGVLLAGVIYRYALHDPLIWSDELASTLFIWLSMLGAVLALDRGEHMRLTAI 98
           AAALVV E  VLLAGVI R+  ++P+ W+DELAS LF+WL+ LGA +AL RG HMR T +
Sbjct: 32  AAALVVGEVAVLLAGVIMRFIFNNPIPWADELASILFLWLANLGAAVALRRGTHMRTTVL 91

Query: 99  VNKLSDKWRVWLETVAALIVCIFVLMIIHPAVDHASEQMAITTPALEIPDGLRAAALPVG 158
           V  +S++ + W E +A +  C+ +L+++HP  ++A ++M + TPAL  P+ +RAAA+ VG
Sbjct: 92  VGFMSERGKAWAEALAIIAPCVMLLILMHPMWEYAEDEMFVQTPALGWPNTVRAAAVAVG 151

Query: 159 AILMFLAAIARMASRSSVRQVLSAVAVVAVIGAVLWICKPALLAMGNYNLIVFF 212
           A LM   ++ R+ SR  +  ++  +A++AV+   +++    L A+GN+NL+VFF
Sbjct: 152 AALMIALSLLRI-SRQKLVDLVGVLALLAVVAGAMYLGAAWLQAIGNWNLVVFF 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,006,682
Number of extensions: 33653
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 3
Length of query: 369
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 282
Effective length of database: 1,207,925
Effective search space: 340634850
Effective search space used: 340634850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)