BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0002.p (111 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 140 3e-35 gi|300310578|ref|YP_003774670.1| beta-hydroxybutyrate dehydrogen... 71 2e-14 gi|300310680|ref|YP_003774772.1| 3-oxoacyl-[acyl-carrier-protein... 64 3e-12 gi|300313264|ref|YP_003777356.1| short-chain alcohol dehydrogena... 60 5e-11 gi|300311122|ref|YP_003775214.1| short-chain dehydrogenase [Herb... 59 6e-11 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 140 bits (353), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/93 (74%), Positives = 80/93 (86%) Query: 1 MNQNDSGARVALVTGGAMGIGAAISQRLARDGYTVLVSDINLEAATATADKINADGGKAA 60 MN+NDSGARVALVTGGAMGIGA+ISQ+LA G+TVLV+DINL+AA+ TAD + A G +AA Sbjct: 1 MNRNDSGARVALVTGGAMGIGASISQQLAAKGHTVLVADINLDAASKTADALVAAGHRAA 60 Query: 61 PLAMDVSKPESIGKAFADVEKDYGRCDVLVNNA 93 PL MD+ PESI AFA +EKDYGRCDVLVNNA Sbjct: 61 PLQMDLGSPESIAAAFAHIEKDYGRCDVLVNNA 93 >gi|300310578|ref|YP_003774670.1| beta-hydroxybutyrate dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 260 Score = 70.9 bits (172), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/85 (43%), Positives = 55/85 (64%) Query: 9 RVALVTGGAMGIGAAISQRLARDGYTVLVSDINLEAATATADKINADGGKAAPLAMDVSK 68 +VAL+TG A GIG I+ AR G V+++D+ LEAA ATA++I +GG A +AM+V+ Sbjct: 6 KVALITGSASGIGKEIAVEYARQGAKVVIADLALEAAKATAEEIVKEGGTAMAVAMNVTD 65 Query: 69 PESIGKAFADVEKDYGRCDVLVNNA 93 + K AD YG D++++NA Sbjct: 66 ETQVDKGVADAVNTYGGLDIMISNA 90 >gi|300310680|ref|YP_003774772.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 247 Score = 63.9 bits (154), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 54/87 (62%) Query: 9 RVALVTGGAMGIGAAISQRLARDGYTVLVSDINLEAATATADKINADGGKAAPLAMDVSK 68 ++ALVTG A G+G +I++++ GY V ++DI+LE +A A ++A G A PLA+DV + Sbjct: 4 KIALVTGAARGLGESIARKMHAAGYKVALADIDLEQVSAVAASLDASGATAMPLALDVRR 63 Query: 69 PESIGKAFADVEKDYGRCDVLVNNAEK 95 A +E +G VLVNNA + Sbjct: 64 KPDFIAACDAIELRWGGAAVLVNNAGR 90 >gi|300313264|ref|YP_003777356.1| short-chain alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 59.7 bits (143), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 47/85 (55%) Query: 9 RVALVTGGAMGIGAAISQRLARDGYTVLVSDINLEAATATADKINADGGKAAPLAMDVSK 68 R+ALVTG GIG I+ L R+GY V ++ +A T DG A +A DV+ Sbjct: 9 RIALVTGAGSGIGRQITLALLREGYGVALAGRRQDALEETVRLAGEDGPNALVVAADVTD 68 Query: 69 PESIGKAFADVEKDYGRCDVLVNNA 93 P S+ + FA + +GR D+L NNA Sbjct: 69 PASVKQLFAKTRERFGRLDMLFNNA 93 >gi|300311122|ref|YP_003775214.1| short-chain dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 59.3 bits (142), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 4/94 (4%) Query: 1 MNQNDSGARVALVTGGAMGIGAAISQRLARDGYTVLVSDI-NLEAATATADKINADGGKA 59 MN D +V LVTGG+ GIGAA + + GY V V+ + N AA A +I A GG+A Sbjct: 1 MNMAD---KVILVTGGSRGIGAATALLAGQRGYAVAVNYVTNRAAADAVVAQIQAAGGRA 57 Query: 60 APLAMDVSKPESIGKAFADVEKDYGRCDVLVNNA 93 + DV++ E + + FA V+ + GR LVNNA Sbjct: 58 IAVGGDVAREEDVLQLFATVDGELGRVTALVNNA 91 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 354,355 Number of extensions: 12906 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 10 Length of query: 111 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 38 Effective length of database: 1,274,215 Effective search space: 48420170 Effective search space used: 48420170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)