BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0048.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313290|ref|YP_003777382.1| IclR family transcription regul... 107 7e-25 gi|300313272|ref|YP_003777364.1| transcription regulator protein... 89 4e-19 gi|300313063|ref|YP_003777155.1| transcription regulator protein... 83 1e-17 gi|300310493|ref|YP_003774585.1| transcription regulator protein... 81 7e-17 gi|300313062|ref|YP_003777154.1| IclR family transcription regul... 76 2e-15 >gi|300313290|ref|YP_003777382.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 107 bits (267), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 105/197 (53%), Gaps = 2/197 (1%) Query: 1 VPRSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRD 60 +PR+ V R L TL+++G+ + + ++ L +L LG+ YL+S LT +P L+ + Sbjct: 47 IPRAAVRRCLHTLKQLGYADSDVN--NFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISR 104 Query: 61 EIGYSCNLVVRDGRSIVYVAKSVTQTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELRD 120 +G SC+L V D ++YVA+S + +N G+RLPA+ T LGR +L L +L+ Sbjct: 105 TLGESCSLAVLDDHEVLYVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKA 164 Query: 121 LYPEEHLEVFSSNTPKTVVELFDMVQNDKQRGYVLQEGFFETSISTIAAPVRDLSGKVVA 180 + + L + T + L D++ + GY + + E + +IA PVR SG V+A Sbjct: 165 YFDKVKLRALTEKTVVSQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLA 224 Query: 181 AMGATIPSPHIDTDQLD 197 A+ + + Q++ Sbjct: 225 ALNVGAQAARVSVAQME 241 >gi|300313272|ref|YP_003777364.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 88.6 bits (218), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 2/184 (1%) Query: 3 RSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRDEI 62 R+ R L TL +G++ ++ + + L VLRLG YL S L I +PLL RL + Sbjct: 56 RAAARRYLITLTHLGYMRHDN--KTFSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSL 113 Query: 63 GYSCNLVVRDGRSIVYVAKSVTQTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELRDLY 122 G + + V D +V VA ++ + GTR+PA+ T GR+LL +L A+L + Sbjct: 114 GEAASCGVLDHDQLVCVAAVSAGQLVSTTLQPGTRVPAYCTANGRILLANLPPAQLDAIL 173 Query: 123 PEEHLEVFSSNTPKTVVELFDMVQNDKQRGYVLQEGFFETSISTIAAPVRDLSGKVVAAM 182 E +++T V L + + +GY L + E + T+A PVR+ G+VVAAM Sbjct: 174 ARAQPEAITAHTITDVERLGLEIARARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAM 233 Query: 183 GATI 186 ++ Sbjct: 234 NISV 237 >gi|300313063|ref|YP_003777155.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 83.2 bits (204), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 2/185 (1%) Query: 3 RSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRDEI 62 R+ R L TLE +G++ G+ + L VL++G+ Y S L I +P L ++ + Sbjct: 63 RTAARRYLLTLEHLGYLHSE--GKTFALTPRVLKVGWSYFDSAPLPRILQPFLQQITGQT 120 Query: 63 GYSCNLVVRDGRSIVYVAKSVTQTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELRDLY 122 G + V DG +V++A++ + +G R+PA G V+L L ++RD Sbjct: 121 GEAVYASVLDGWDLVFIARNGATRVMTTGFVLGARVPAQLASPGIVMLSALPEQQVRDWL 180 Query: 123 PEEHLEVFSSNTPKTVVELFDMVQNDKQRGYVLQEGFFETSISTIAAPVRDLSGKVVAAM 182 + F+ +T +L+ ++ +Q GY + E +T + IA P+++ KV+ A+ Sbjct: 181 ATCAMTPFTPHTITDPDQLYALIAQARQLGYAVVEQQLQTGVRGIAVPLKNRHAKVIGAL 240 Query: 183 GATIP 187 ++P Sbjct: 241 SLSLP 245 >gi|300310493|ref|YP_003774585.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 81.3 bits (199), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 2/189 (1%) Query: 1 VPRSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRD 60 + +S+ R++ TLE +G++ ++ R Y+L V+ +G+ YLA+ L ++ P L L + Sbjct: 45 ISKSSAQRMVHTLETLGYICKHPKTRRYQLTPKVMEVGYNYLAADILVDVANPFLSELAN 104 Query: 61 EIGYSCNLVVRDGRSIVYVAKSVTQTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELRD 120 G + NL +VYVA+ V H+ +G+R+P + T GR L L E + Sbjct: 105 ITGETVNLTEPYDGEMVYVARFVASKFIPIHMPIGSRIPMYCTASGRAYLSALEPEEAQA 164 Query: 121 LYPEEHLEVFSSNTPKTVVELFDMVQNDKQRGYVL-QEGFFETSISTIAAPVRDLSGKVV 179 + V + +T V ++ ++ ++RG+ +E F +S IA+PV + K V Sbjct: 165 ILESSERTVHTPHTRTDVEDIMQLLAASRERGFASNREELFLGDMS-IASPVFNSERKPV 223 Query: 180 AAMGATIPS 188 A++ P+ Sbjct: 224 ASVHVVAPT 232 >gi|300313062|ref|YP_003777154.1| IclR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 14/189 (7%) Query: 3 RSTVFRLLTTLERMGFVERNDGGRDYRLGMAVLRLGFEYLASLELTEIGRPLLDRLRDEI 62 RS R L TL G + G+ + L +L LG YL S + P L RL ++ Sbjct: 50 RSAARRYLLTLVHTGMAASD--GKKFWLMPRLLNLGQSYLESARVPRAVVPFLQRLTQQL 107 Query: 63 GYSCNLVVRDGRSIVYVAKSVTQTAFASHVNVGTRLPAHATVLGRVLLEDLTLAELR--- 119 S N + DG IVYV + + GTRLPA+ T GRVLL AE++ Sbjct: 108 QESTNFSLLDGDEIVYVTRVTAAQLVNAGFEPGTRLPAYTTTAGRVLLGMREDAEIQAYL 167 Query: 120 ---DLYPEEHLEVFSSNTPKTVVELFDMVQNDKQRGYVLQEGFFETSISTIAAPVRDLSG 176 +L P H+ + T K LF + +++GY + E FE + IA V++ +G Sbjct: 168 ERVNLIPHTHMAM----TDKAA--LFQEILTMRRQGYGITENQFEMGMRGIAIAVKNRNG 221 Query: 177 KVVAAMGAT 185 +V+ A+ T Sbjct: 222 RVIGALSVT 230 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 698,965 Number of extensions: 28309 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 7 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)