BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0042.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312968|ref|YP_003777060.1| nitrate/sulfonate/bicarbonate A... 132 2e-32 gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate A... 115 6e-27 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 107 1e-24 gi|300309803|ref|YP_003773895.1| nitrate/sulfonate/bicarbonate A... 106 2e-24 gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate A... 94 9e-21 >gi|300312968|ref|YP_003777060.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/199 (37%), Positives = 111/199 (55%) Query: 81 DLLTHFGITAMEVVFGFLFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLF 140 ++ +H IT E V F+ G + GLA+G+ L LSP A A+L PY+ A P+V AP+F Sbjct: 78 EIYSHLLITLTETVLAFVIGTVFGLAIGLWLALSPTASAILDPYVKAANSMPRVILAPIF 137 Query: 141 VMWLGYTIYPKIIVAVLIVFFPIMINVLSAVRTVDPDMVNLVRTLNAGRWQIFHLVEFRS 200 MW G I+ K+ +AV +VFF + NV V+ V P ++ R L A Q+ V S Sbjct: 138 AMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANARMLGANARQLLRTVYLPS 197 Query: 201 ALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVAICALTLIGI 260 A +FS L + L+ +G VGE +G +G+GYL++ EG + VF I LT+ + Sbjct: 198 ATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGTFDINTVFAGIVVLTIFAL 257 Query: 261 VTYGAVVWAERRVLHYLPK 279 V AV E+R++ + PK Sbjct: 258 VLDLAVGVIEKRLMKWQPK 276 >gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 259 Score = 115 bits (287), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 4/244 (1%) Query: 30 ERARTVCGSLVVLVLFLASWQWGPGWLGMPEYILPNLSHVLRESVVMWNNNDLLTHFGIT 89 RA T +L++ L WQ+ + ++I P+ +L+ V + +T ++ Sbjct: 10 NRAATTLAPWFLLLVILGVWQFICSVWQVSDFIFPSPGSILQAMV---DYAGPITEHALS 66 Query: 90 AMEVVF-GFLFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTI 148 V GF ++G+ +G +G SP A P + A PK AF P+ V+W G Sbjct: 67 TFWVTMVGFAIAVVVGVTLGFVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGA 126 Query: 149 YPKIIVAVLIVFFPIMINVLSAVRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSG 208 P I+ A LI FFPIM+N+ + + T++P++ +++R L A R I V ++P F+ Sbjct: 127 GPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFAS 186 Query: 209 LRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVAICALTLIGIVTYGAVVW 268 L++A TL+ +G TV E+ NQG+GYLLV F + + + + Y Sbjct: 187 LKVAITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAI 246 Query: 269 AERR 272 E+R Sbjct: 247 IEKR 250 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 120/227 (52%) Query: 58 MPEYILPNLSHVLRESVVMWNNNDLLTHFGITAMEVVFGFLFGALLGLAVGVALGLSPRA 117 +P +LP S + + +LL H + V GF+ G+ L +A+G+ +G+S RA Sbjct: 48 IPARLLPPPSELAHTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRA 107 Query: 118 EAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAVRTVDPD 177 EA+L P AL+ P +A+ PL ++WLG PK+++ + FFP+ +N+++ +R +D Sbjct: 108 EALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHK 167 Query: 178 MVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLV 237 ++ + T + + ++LP LF+GLR +L+ + + EL+ +G+GYLL Sbjct: 168 LIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLS 227 Query: 238 DGEGQGNTAAVFVAICALTLIGIVTYGAVVWAERRVLHYLPKVHTST 284 DG V AI L L+G ++ G + E++ L + S+ Sbjct: 228 DGRESSRPDLVLAAILILALLGKLSDGLLRAVEQKSLGWREARRQSS 274 >gi|300309803|ref|YP_003773895.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 267 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 26 PLLNERAR-TVCGSLVVLVLFLASWQWGPGWLGMPEYILPNLSHVLRESVVMWNNNDLLT 84 PL+N V L++ + L WQ L +P Y++P + +++ W+ L+ Sbjct: 7 PLVNRPGFWRVAAPLIIGIALLLMWQIVCTLLEVPPYLVPTPALIVKTLAADWSM--LMA 64 Query: 85 HFGITAMEVVFGFLFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLFVMWL 144 +T F +LG+A+ S E L PY + LQ+ P VA APL ++W+ Sbjct: 65 SLLVTLKITFLAFALAVVLGVAIAFVFVQSRFIEISLFPYAIILQVTPIVAIAPLIIIWV 124 Query: 145 GYTIYPKIIVAVLIVFFPIMINVLSAVRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPA 204 T + A ++ FPI+ N +R+V+P ++NL R A RWQ + SALP Sbjct: 125 KDTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSALPY 184 Query: 205 LFSGLRIASTLSVIGVTVGELVGGN----QGLGYLLVDGEGQGNTAAVFVA 251 F GLRI+S L++IG V E V G GL Y ++ Q N +F A Sbjct: 185 FFGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAA 235 >gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 284 Score = 94.4 bits (233), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 131/285 (45%), Gaps = 14/285 (4%) Query: 2 DTSTTANPMTTPAPETGTIAKVKRPLLNERARTVCGSLVVLVLFLASWQ------W-GPG 54 S +A M A E A+ +R + + + + +LV+ L W+ W P Sbjct: 5 QASQSAATMDIAAVE----AEAQRKIRARKQLVIGLRIAILVIVLGGWEVCARIGWIDPF 60 Query: 55 WLGMPEYILPNLSHVLRESVVMWNNNDLLTHFGITAMEVVFGFLFGALLGLAVGVALGLS 114 + P I+ + + E + L T +T E V GFL G++ G+ G+ LG + Sbjct: 61 FFSQPSLIVAQIYDWMVEGT---SQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRN 117 Query: 115 PRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAVRTV 174 + S YI P+V +FV+ G + K+ +AV++VFF + N VR Sbjct: 118 KLLSDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREA 177 Query: 175 DPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGY 234 D M+ + L A R Q+ V SAL + + L ++ +++G VGE +G QG+G Sbjct: 178 DRYMIANAQILGASRRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 237 Query: 235 LLVDGEGQGNTAAVFVAICALTLIGIVTYGAVVWAERRVLHYLPK 279 L+ +G N + VF A+ L ++ + + ERR+L + P+ Sbjct: 238 LISTAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKWRPQ 282 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.141 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 869,337 Number of extensions: 34541 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 15 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)