BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0041.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate A...    60   3e-10

>gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 14/258 (5%)

Query: 55  FAPWVLAQHKGYYADENLK-----INFIVAKGGVDVAKQIGAGNAVIGGAIGDTPIVVRA 109
           ++P  L   K  + +E+LK     + +++++G     + + + +   G   G   ++ RA
Sbjct: 42  YSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDSVDFGSTAGLAALLARA 101

Query: 110 NGIPVKAIAVLGAGSITMVAANAGENIKSLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGL 169
           NG PVKA+ +      T +A      +KS+ +LKGK +     TD  Y   L +L   GL
Sbjct: 102 NGNPVKAVYIYSRPEWTALAVGKESPVKSINELKGKKIAATKGTD-PYLFLLRALHENGL 160

Query: 170 SKTDLQIQAAGPAGVWQVFTAGKASAFAGV-PDWVVNSTDAGAKVELLDNGGFKSMAQAI 228
            K+D++I     A        G+ +A+AG+ P    +  +AG+++ +  N  F +    +
Sbjct: 161 KKSDVEIVHLQHADGRAALEQGRVAAWAGLDPHLAASELEAGSRL-IYRNVNFNTYG-FL 218

Query: 229 LASDDTIKNKPELLKRLVRATLRGMQDIMKDPKAAATDYVAALPAYKGKEASIEATFEMY 288
             SD      P+ +KR++ A  R    I+  P     D   AL + + K ++  A  ++ 
Sbjct: 219 NVSDSFAARHPDQVKRVIAAYERARSWIIAHP-----DETVALLSEESKLSAPVARLQLK 273

Query: 289 RKYVYAGQKTLGQIDAAR 306
           R      Q     I+A R
Sbjct: 274 RNDFSQPQIGREHIEALR 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 901,380
Number of extensions: 34449
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)