BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0040.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 218 3e-58 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 196 2e-51 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 194 5e-51 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 192 2e-50 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 172 2e-44 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 218 bits (556), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/251 (45%), Positives = 163/251 (64%), Gaps = 2/251 (0%) Query: 4 IEFRNVGKSFVDRQT-SQPRAAVTNVNLSIRSGEVVSIIGPSGCGKSTLLNMGAGLYLPT 62 ++F N+ +FV + SQ AV N +L+I GE VS++GP+GCGKSTLLN+GAGL P+ Sbjct: 5 LQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPS 64 Query: 63 SGEVIVGGQRVTKPVRNVAFMLQKDLLMPWRNIRANVSLGLEIDGVNAAERKRVADELLA 122 SG V V G+ + R +M Q + LMPWR+ NV GL+ G + ++ LA Sbjct: 65 SGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGEQWLA 124 Query: 123 KCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLMDEPFSALDAQTKMVLQQDLAKM 182 + L+GF + YP+QLSGGMR+R ALA+TL +DP ++LMDEPFSALD QT+ +++ ++ + Sbjct: 125 RVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLDL 184 Query: 183 LFEKKKTALFITHDLVEAIALSDRLLVMSERPGTI-IEEIEVNLPFRDNPLERRKLPEIG 241 KKK LFITHDL EAIA+SDR++V++ PGT I E ++LP + E R P Sbjct: 185 WNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHPRFV 244 Query: 242 PLQGRLMELLK 252 L ++ ++L+ Sbjct: 245 ELHQQIWDVLR 255 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 196 bits (498), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 144/225 (64%), Gaps = 5/225 (2%) Query: 4 IEFRNVGKSFVDRQTSQPRAAVT--NVNLSIRSGEVVSIIGPSGCGKSTLLNMGAGLYLP 61 IE RNV F+ T+ RA V + ++S+ GE V+++GP+GCGKST L++ GL P Sbjct: 22 IELRNVSCRFI---TADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKP 78 Query: 62 TSGEVIVGGQRVTKPVRNVAFMLQKDLLMPWRNIRANVSLGLEIDGVNAAERKRVADELL 121 T GEV V GQ V + F+ Q D + PWR++R NV+ G G A+ +ADE + Sbjct: 79 TLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWI 138 Query: 122 AKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLMDEPFSALDAQTKMVLQQDLAK 181 + L F +HYP+QLSGGMR+R ALA+T P++LLMDEPFSALD QT+ ++Q +L + Sbjct: 139 RRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLR 198 Query: 182 MLFEKKKTALFITHDLVEAIALSDRLLVMSERPGTIIEEIEVNLP 226 + + +F+THDL EAIAL+D++ V++ RP T+ ++LP Sbjct: 199 LWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLP 243 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 194 bits (494), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 101/228 (44%), Positives = 146/228 (64%), Gaps = 4/228 (1%) Query: 24 AVTNVNLSIRSGEVVSIIGPSGCGKSTLLNMGAGLYLPTSGEVIVGGQRVTKPVRNVAFM 83 A+ ++NL I G+ V ++GPSGCGKSTLLN AG LP+SG+++ + V++P + + Sbjct: 28 ALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMV 87 Query: 84 LQKDLLMPWRNIRANVSLGLEIDGVNAAERKRVADELLAKCHLKGFEEHYPYQLSGGMRQ 143 Q+ L PW + NV+ GLEI G AE + +LL K L F +P LSGGMRQ Sbjct: 88 FQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQ 147 Query: 144 RAALARTLAVDPQVLLMDEPFSALDAQTKMVLQQDLAKMLFEKKKTALFITHDLVEAIAL 203 R A+AR LA+D ++LMDEPF ALDA T+ LQ +L ++ E +KT +F+TH + EAI L Sbjct: 148 RVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYL 207 Query: 204 SDRLLVMSERPGTIIEEIEVNLPFRDNPLERRKLPEIGPLQGRLMELL 251 +DR++VM+ RPGT+ ++ VNLP +P + PE L+ L +L+ Sbjct: 208 ADRIVVMTYRPGTVKRDMLVNLPRLRDPAD----PEFNALKRELGQLV 251 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 192 bits (488), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/262 (41%), Positives = 152/262 (58%), Gaps = 17/262 (6%) Query: 2 IEIEFRNVGKSFVDRQTSQPRAAVTNVNLSIRSGEVVSIIGPSGCGKSTLLNMGAGLYLP 61 +++ F NV K F D + I SGE+V+++GPSGCGKSTLL+M AGL P Sbjct: 1 MKLSFNNVAKHFGDLHV------IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKP 54 Query: 62 TSGEVIVGGQRVTKPVRNVAFMLQKDLLMPWRNIRANVSLGLEIDGVN---AAERKRVAD 118 +SG V GQ + P M Q++ L PW ++ NV+L LE V+ AAE+ RV Sbjct: 55 SSGSVAGDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARV-- 112 Query: 119 ELLAKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLMDEPFSALDAQTKMVLQQD 178 L LKGFE +YP+Q+SGGMRQRAALAR P+ LL+DEPF ALDA T+M LQ Sbjct: 113 -WLENVKLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDA 171 Query: 179 LAKMLFEKKKTALFITHDLVEAIALSDRLLVMSERPGTIIEEIEVNLPFRDNPLERRKLP 238 L ++ ++ T + +THD+ EA+ L+DR+ V S RP +++E NL + + L Sbjct: 172 LRDLIRQQGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEF--NLVHHE---KTHDLS 226 Query: 239 EIGPLQGRLMELLKVGKETAEL 260 E ++ ++ LL + E E Sbjct: 227 EFAAIRRDILCLLGIHAEQDEF 248 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 137/237 (57%), Gaps = 12/237 (5%) Query: 4 IEFRNVGKSFVDRQTSQPRAAVTNVNLSIRSGEVVSIIGPSGCGKSTLLNMGAGLYLPTS 63 ++FR+V ++ AV +++L R+GE ++I+GPSGCGKST + + GL P Sbjct: 6 VDFRHVYLAY----DGAAEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNR 61 Query: 64 GEVIVGGQRVTKPVRNVAFMLQKDLLMPWRNIRANVSLGLEI-------DGVNAAERKRV 116 G V++ GQ VT P++ V Q L+PWR NV L LEI AE Sbjct: 62 GSVVIDGQTVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKQKKAEYTER 121 Query: 117 ADELLAKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLMDEPFSALDAQTKMVLQ 176 A LL L G+ + +P+QLSGGM+QRA++ R L +P++LL+DEPF ALDA T+ L Sbjct: 122 ALSLLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELW 181 Query: 177 QDLAKMLFEKKKTALFITHDLVEAIALSDRLLVMSERPGTIIEEIEVNLPFRDNPLE 233 L + E++ + +THDL EA L+D + VMS+RPG I+ E LP R PLE Sbjct: 182 CVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVRRENPLP-RPCPLE 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 760,411 Number of extensions: 30930 Number of successful extensions: 446 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 136 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)