BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0038.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring pro...   278   2e-76
gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring pro...   105   3e-24

>gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score =  278 bits (712), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/229 (65%), Positives = 190/229 (82%), Gaps = 11/229 (4%)

Query: 1   MIQGRIA--CTAYAAGLLCMLSACSSPPPMVQGPTSVRPAYPVANIENNGAIFRVSSAQL 58
           +IQ R+A  CT     L  +LSAC+SP PMV GPTSVRPAY VAN+ENNGAIFRVSSAQL
Sbjct: 2   LIQTRLAGACT-----LAALLSACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQL 56

Query: 59  FEESTTHYVGDILKIEIAESLTGSNKSTTSNSRDTSLKQVGPGAGSSMSGLLASVFNINA 118
           FEE T + VGDI+KI+I+ES++ SNK+ T+NSRD+SL Q GPG+G+ + GL   +++ N 
Sbjct: 57  FEEPTAYNVGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANY 116

Query: 119 TATGSDSFKGSGQTDNSNSMTGSLMVSIIEVLPNGNLVVAGEKRIGMNGSINTLRFSGVV 178
           +A+G+++FKGSG + N+N+M+G+LMVSI+EVLPN NLVVAGEKRIG+NG+INTLRFSGVV
Sbjct: 117 SASGNNTFKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVV 176

Query: 179 RARDIRGGNVVSSSNVADARLEQVGGGTVADANSQGWMQQFFRSVLTFW 227
           R RDIRGG +V+SSNVADARLEQVGGG++ADA++ G    FFR +LT W
Sbjct: 177 RTRDIRGG-IVASSNVADARLEQVGGGSIADASTDG---NFFRRLLTIW 221


>gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  105 bits (262), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 15/219 (6%)

Query: 13  AGLLCMLSACSSPPPMVQGPTSVRP-----AYPVANIENNGAIFRVSSAQLFEESTTHYV 67
           AG+L +    + P  +V GP S RP     A P +     GA++R     L E+     V
Sbjct: 11  AGILAVAGCTTVPDSIVAGPKSARPQPASYAPPTSGAIFQGAVYR----PLLEDRRARLV 66

Query: 68  GDILKIEIAESLTGSNKSTTSNSRDTSLKQVGPGAGSSMSGLLASVFNINATATGSDSFK 127
           GD L I I E  +    + +S S+  ++    P      +    S+  + A  + S  F 
Sbjct: 67  GDTLTIVINEKTSAGKSAASSASKTGAVNSPVP------TFFGTSIKELTANGSSSAKFD 120

Query: 128 GSGQTDNSNSMTGSLMVSIIEVLPNGNLVVAGEKRIGMNGSINTLRFSGVVRARDIRGGN 187
             G T +SN+ TG++ V+++EVLPNGNLVVAGEK++ ++  +  +RFSG V   +I+ GN
Sbjct: 121 DKGATTSSNTFTGTIGVTVVEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGN 180

Query: 188 VVSSSNVADARLEQVGGGTVADANSQGWMQQFFRSVLTF 226
            VSS+ VADA++E      V  A+    + +FF S+  F
Sbjct: 181 TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSISPF 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 596,642
Number of extensions: 20999
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)