BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0034.p (116 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 80 4e-17 gi|300309917|ref|YP_003774009.1| short chain dehydrogenase/reduc... 79 7e-17 gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein... 77 4e-16 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 73 5e-15 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 69 8e-14 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 80.1 bits (196), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 69/106 (65%), Gaps = 5/106 (4%) Query: 14 LGESGFPAS---AAAKAGIEALVKSLAVQLAPSGATVNAVAPGYVQKSDPNKSAIDPAAW 70 +GE+G P AAAKAG+ + ++LA ++ TVN VAPG++ +D + A++ Sbjct: 147 VGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPGFI-DTDMTR-ALNEQQS 204 Query: 71 AAALERIPMQRLGQPQEIANVIAFLLSPAASYVTGQVWHIDGGLTL 116 AA L++IP+ RLG +EIA +AFL SP A+Y+TG +++GG+ + Sbjct: 205 AAILQQIPLGRLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGMYM 250 >gi|300309917|ref|YP_003774009.1| short chain dehydrogenase/reductase family protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 79.3 bits (194), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 41/94 (43%), Positives = 56/94 (59%) Query: 20 PASAAAKAGIEALVKSLAVQLAPSGATVNAVAPGYVQKSDPNKSAIDPAAWAAALERIPM 79 P +A+K G+ L KSLA+ A G VNAVAPG++ DP L R P+ Sbjct: 144 PGYSASKGGVAQLTKSLAIAYAADGIRVNAVAPGWIATPLTQALQDDPVRAGPILARTPL 203 Query: 80 QRLGQPQEIANVIAFLLSPAASYVTGQVWHIDGG 113 R GQP+++ V+AFL SPAAS++TG + +DGG Sbjct: 204 GRWGQPEDVGQVVAFLCSPAASFMTGAIVPVDGG 237 >gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 76.6 bits (187), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 5/101 (4%) Query: 14 LGESGFPASAAAKAGIEALVKSLAVQLAPSGATVNAVAPGYVQKSDPNKSAIDPAAWAAA 73 +G G +AAKAG+ K+LA++LA TVN VAPG + + ID Sbjct: 149 IGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPGLIDTDMTEDAPIDEI----- 203 Query: 74 LERIPMQRLGQPQEIANVIAFLLSPAASYVTGQVWHIDGGL 114 L+ IP +R G+P+E+A +AFL+SP A+Y+T QV ++GGL Sbjct: 204 LKLIPARRAGKPEEVAAAVAFLMSPDAAYITRQVISVNGGL 244 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 73.2 bits (178), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 69/116 (59%), Gaps = 5/116 (4%) Query: 1 VVAVSSFVAHVYRLGESGFPASAAAKAGIEALVKSLAVQLAPSGATVNAVAPGYVQKSDP 60 ++ +SS + G++ + + AKAGI +LA ++A G TVN V+PGY+ +D Sbjct: 135 IINISSVNGQKGQFGQTNY---STAKAGIHGFTMALAQEVATKGVTVNTVSPGYI-GTDM 190 Query: 61 NKSAIDPAAWAAALERIPMQRLGQPQEIANVIAFLLSPAASYVTGQVWHIDGGLTL 116 + AI P + IP++RLG+P+EIA+++A++ S Y TG + ++GGL + Sbjct: 191 VR-AIRPEVLEKIVSGIPVKRLGEPEEIASIVAWIASSEGGYATGSDFSLNGGLYM 245 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 69.3 bits (168), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 18 GFPASAAAKAGIEALVKSLAVQLAPSGATVNAVAPGYVQKSDPNKSAIDPAAWAAALERI 77 G P +AAKAG+ L +++A + P G VN + PG + +D NK + A + I Sbjct: 151 GGPHYSAAKAGVLGLARAMAREFGPQGIRVNCITPGLI-STDINKDILSAEKKAEIAQTI 209 Query: 78 PMQRLGQPQEIANVIAFLLSPAASYVTGQVWHIDGGLTL 116 P+ RLG P ++ V FL S + Y TG ++GG+ + Sbjct: 210 PLGRLGGPDDVGGVCVFLASDLSQYCTGVTLDVNGGMLI 248 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.129 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 402,062 Number of extensions: 15892 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 25 Length of query: 116 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 43 Effective length of database: 1,274,215 Effective search space: 54791245 Effective search space used: 54791245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)