BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0033.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312809|ref|YP_003776901.1| glutamine ABC transporter perme... 130 8e-32 gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transpo... 129 2e-31 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 126 1e-30 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 123 1e-29 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 120 1e-28 >gi|300312809|ref|YP_003776901.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 130 bits (327), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 125/214 (58%) Query: 3 HWDFAALWQFRNVIAVGFGYTLAYTVACVLLGLLIGLAVGLGRLSTNPLVSGPLRAYVEV 62 +DF+ + + G T+ T A ++ G L+GL GL R N L+ G YVE Sbjct: 2 DFDFSVITDSLPALLEGAKVTVLITAAGLVGGTLVGLLAGLMRAYGNTLLKGIGFGYVEF 61 Query: 63 FRCTPVLVQLVWFYYALPVLVGIEMSAGTSALLALALYGGAFYSEIIRGGIVSIDIGQSE 122 R TP++VQ+++ Y+ALPVL+GI + T+A+ ++ + GA+ +EI+RG +S+ G E Sbjct: 62 VRGTPIVVQVMFIYFALPVLLGIRVDPMTAAVTSIVVNSGAYIAEIVRGAFLSVPRGLRE 121 Query: 123 AGCALGMTRFQLMRRVILPQAFKRMTPPLVSQSIMQLKNTSLLSVLAVPDLLYQGQIIAH 182 AG ALG+ ++++ VI P A +RM P + +Q I+ LK+TSL V+ V +L QGQ I Sbjct: 122 AGLALGLPVWRVLAFVIGPVAIRRMVPAMGNQFIVSLKDTSLFIVIGVGELTRQGQEIMA 181 Query: 183 ETYRPLEIYTMVAVIYFLILLPATIWAKRLENRL 216 +R +EI+ VA IY ++ T + E R+ Sbjct: 182 ANFRAVEIWIAVAAIYLCMIGVMTYALRTFEKRM 215 >gi|300313149|ref|YP_003777241.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 129 bits (323), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 123/207 (59%), Gaps = 9/207 (4%) Query: 19 GFGYTLAYTVACVLLGLLIGLAVGLGRLSTNPLVSGPLRAYVEVFRCTPVLVQLVWFYYA 78 G +TL T + + G+++G + + RLS+N +S YV + R P+++ + WFY+ Sbjct: 21 GLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYVNLIRSIPLVLVIFWFYFL 80 Query: 79 LPV----LVG----IEMSAGTSALLALALYGGAFYSEIIRGGIVSIDIGQSEAGCALGMT 130 +P ++G I++ A SAL+ L+ A+Y EI+R GI SI GQ AG A+GM Sbjct: 81 VPFIGAWMIGASEPIQVGAFQSALITFILFEAAYYCEIMRSGIQSIPRGQVFAGYAIGMN 140 Query: 131 RFQLMRRVILPQAFKRMTPPLVSQSIMQLKNTSLLSVL-AVPDLLYQGQIIAHETYRPLE 189 +Q+M V+LPQAF+ MTP L++Q+I+ ++ SL+ VL +VPD + IA R +E Sbjct: 141 YWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSVPDFVTSASKIAQRDGRLVE 200 Query: 190 IYTMVAVIYFLILLPATIWAKRLENRL 216 +Y VAV+YF++ + KR + ++ Sbjct: 201 MYLFVAVVYFVLSFGLSTLVKRFQKKI 227 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 126 bits (317), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 123/220 (55%), Gaps = 27/220 (12%) Query: 23 TLAYTVACVLLGLLIGLAVGLGRLSTNP----------LVSGPLRAYVEVFRCTPVLVQL 72 TL + CV+ G GL +G+GRL+ V P+R YV R TP+ VQ+ Sbjct: 24 TLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQWPIRFYVSFLRGTPLFVQI 83 Query: 73 VWFYYAL-PVLV----GIEMS------------AGTSALLALALYGGAFYSEIIRGGIVS 115 + ++AL P+L+ G+ +S A SA+LA+ L GA+ SEI R GI S Sbjct: 84 LLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAITLNSGAYVSEIFRAGIQS 143 Query: 116 IDIGQSEAGCALGMTRFQLMRRVILPQAFKRMTPPLVSQSIMQLKNTSLLSVLAVPDLLY 175 ID GQSEA +LGM+ +RRV+LPQAF+RM PPL + +I +K++SL S + + +L Y Sbjct: 144 IDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNNAIAIVKDSSLASAIGLAELAY 203 Query: 176 QGQIIAHETYRPLEIYTMVAVIYFLILLPATIWAKRLENR 215 + ++ R E Y ++VIY+LI L + + LE R Sbjct: 204 AARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLEAR 243 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 123 bits (309), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 120/208 (57%), Gaps = 1/208 (0%) Query: 9 LWQFRNVIAVGFGYTLAYTVACVLLGLLIGLAVGLGRLSTNPLVSGPLRAYVEVFRCTPV 68 L Q +A G GYTL + +A +L GL++G + + R+ + P YV + R TP+ Sbjct: 9 LQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPL 68 Query: 69 LVQLVWFYYALPVLVGIEMSAGTSALLALALYGGAFYSEIIRGGIVSIDIGQSEAGCALG 128 LVQ+ YY LP + GIE S T+ +L L+L A+ SE +RG I+ + GQ A ++G Sbjct: 69 LVQIFVVYYGLPGM-GIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVG 127 Query: 129 MTRFQLMRRVILPQAFKRMTPPLVSQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYRPL 188 +T FQ +R +I+PQA + P + + I +K+TSL+SV+ V +L+ + + T+RPL Sbjct: 128 LTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPL 187 Query: 189 EIYTMVAVIYFLILLPATIWAKRLENRL 216 +Y A IY+++ L RLE +L Sbjct: 188 PLYVAAAAIYWMLSLCFEALQHRLEKKL 215 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 120 bits (300), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 1/199 (0%) Query: 22 YTLAYTVACVLLGLLIGLAVGLGRLSTNPLVSGPLRAYVEVFRCTPVLVQLVWFYYALPV 81 +T+ ++ + G + G + L R+S N ++ G Y++V + P+LV L Y+ L + Sbjct: 18 WTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFVAYFGLAI 77 Query: 82 LVGIEMSAGTSALLALALYGGAFYSEIIRGGIVSIDIGQSEAGCALGMTRFQLMRRVILP 141 G +++ +A ++ A+Y AF EI RG I ++ Q EA LG RF+ + +VILP Sbjct: 78 -AGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQLTKVILP 136 Query: 142 QAFKRMTPPLVSQSIMQLKNTSLLSVLAVPDLLYQGQIIAHETYRPLEIYTMVAVIYFLI 201 QA K TPP V + +KNTSL SV+ DL GQII + T++P ++ VA+IYF + Sbjct: 137 QAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVALIYFCL 196 Query: 202 LLPATIWAKRLENRLTAQQ 220 P + +K E +L Sbjct: 197 CFPLSALSKHFERKLNVSH 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.142 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 584,557 Number of extensions: 19086 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 19 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)