BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0032.p (266 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 283 1e-77 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 258 3e-70 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 249 2e-67 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 242 2e-65 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 240 8e-65 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 283 bits (723), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 147/252 (58%), Positives = 179/252 (71%), Gaps = 14/252 (5%) Query: 18 MIEIRNLKKAFGDHVVLKDISLQVNKGSVVAMIGPSGSGKSTLLRCINLLTVPEQGSIRV 77 MIE++ + K FG H VLKD+SL V +G VV +IGPSGSGKST+LRCIN L E+G I + Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 78 GAQDFTFGSKASKPLKDRE---LARFRTNTGMVFQHFNLFPHMTALENVMEGMLTVLRKP 134 Q DR+ + R RT GMVFQ FNLFPH T LENV EG + V Sbjct: 61 DGQRV-----------DRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLA 109 Query: 135 KAEARAYALELLQKVGLSDRADIYPQRLSGGQKQRVAIARALAMRPGVMLFDEATSALDP 194 +A+AR+ A+ LL KVGL+ R D YP +LSGGQ+QRVAIAR+LAM+P +LFDE TSALDP Sbjct: 110 RAQARSEAMSLLDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDP 169 Query: 195 ELVGEVLNVIRSLAADGMTMILVTHEIAFAREVADQVIFMRDGVVVEAGPPSQVIDNPQQ 254 ELVGEVL V+R+LAADGMTMI+VTHE+ FAREVAD+V F+ G +VE+G +QV+ PQ Sbjct: 170 ELVGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQH 229 Query: 255 AATQSFLTRFNG 266 A TQ FL R G Sbjct: 230 ARTQDFLRRVIG 241 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 258 bits (659), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 139/247 (56%), Positives = 172/247 (69%), Gaps = 3/247 (1%) Query: 15 NEVMIEIRNLKKAFGDHVVLKDISLQVNKGSVVAMIGPSGSGKSTLLRCINLLTVPEQGS 74 E ++E+ L+K+FG HVVLKD+ L V VV +IGPSGSGKST LRC+N L E G+ Sbjct: 2 TEPIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGT 61 Query: 75 IRVGAQDFTFGSKASKPLKDRELARFRTNTGMVFQHFNLFPHMTALENVMEGMLTVLRKP 134 ++V + G + + + L R GMVFQ FNLFPH+T L+N+ + Sbjct: 62 VKVCGRPVVEGGRM---MPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMS 118 Query: 135 KAEARAYALELLQKVGLSDRADIYPQRLSGGQKQRVAIARALAMRPGVMLFDEATSALDP 194 + A+ AL+LL+KVGL+ +A YP LSGGQKQRVAIARALAM P VMLFDE TSALDP Sbjct: 119 RKAAQQQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDP 178 Query: 195 ELVGEVLNVIRSLAADGMTMILVTHEIAFAREVADQVIFMRDGVVVEAGPPSQVIDNPQQ 254 ELVGEVL VIR+LAA+GMTMI+VTHE+ FAREVAD V+ M G +VEAGPP + PQQ Sbjct: 179 ELVGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQ 238 Query: 255 AATQSFL 261 A T+SFL Sbjct: 239 ARTRSFL 245 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 249 bits (635), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 130/246 (52%), Positives = 167/246 (67%), Gaps = 8/246 (3%) Query: 18 MIEIRNLKKAFGDHVVLKDISLQVNKGSVVAMIGPSGSGKSTLLRCINLLTVPEQGSIRV 77 MI++ L+K FG +L+ I ++ VV +IGPSGSGKST LRC+N L G I Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDI-- 58 Query: 78 GAQDFTFGSKASKPLKDRELARFRTNTGMVFQHFNLFPHMTALENVMEGMLTVLRKPKAE 137 F G K + P + L R GMVFQ FNLFPHMT LEN++ + V + + E Sbjct: 59 ----FIEGVKLNDPKVN--LNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRRE 112 Query: 138 ARAYALELLQKVGLSDRADIYPQRLSGGQKQRVAIARALAMRPGVMLFDEATSALDPELV 197 A A +LLQKVGL D+ D +P +LSGGQ+QRVAIARALAM P VMLFDE TSALDPELV Sbjct: 113 AVLVAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELV 172 Query: 198 GEVLNVIRSLAADGMTMILVTHEIAFAREVADQVIFMRDGVVVEAGPPSQVIDNPQQAAT 257 GEVL V++ LA +GMTM++VTHE+ FAREV+D+V+F+ GV++E GPP QV+ +P T Sbjct: 173 GEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERT 232 Query: 258 QSFLTR 263 + FL + Sbjct: 233 RDFLRK 238 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 242 bits (618), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 126/244 (51%), Positives = 157/244 (64%), Gaps = 8/244 (3%) Query: 18 MIEIRNLKKAFGDHVVLKDISLQVNKGSVVAMIGPSGSGKSTLLRCINLLTVPEQGSIRV 77 ++EI N+ K FG + VL ISL V +G VVA+IG SGSGKST+LRCIN L + GSI V Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 78 GAQDFTFGSKASKPLKDRELARFRTNTGMVFQHFNLFPHMTALENVMEGMLTVLRKPKAE 137 T K L R + GMVFQH+NLFPH+T EN+M V + Sbjct: 63 AGHKLTH--------KHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATET 114 Query: 138 ARAYALELLQKVGLSDRADIYPQRLSGGQKQRVAIARALAMRPGVMLFDEATSALDPELV 197 AR A+++L++VGL + D YP++LSGGQ+QRVAIAR+LAM P VMLFDE TSALDPEL Sbjct: 115 ARETAIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELT 174 Query: 198 GEVLNVIRSLAADGMTMILVTHEIAFAREVADQVIFMRDGVVVEAGPPSQVIDNPQQAAT 257 EVL V+ LA GMTM+LVTHE+ FAR VAD +FM G V EA P + +PQ Sbjct: 175 AEVLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEA 234 Query: 258 QSFL 261 + F+ Sbjct: 235 RQFI 238 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 240 bits (613), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 123/245 (50%), Positives = 166/245 (67%), Gaps = 7/245 (2%) Query: 18 MIEIRNLKKAFGDHVVLKDISLQVNKGSVVAMIGPSGSGKSTLLRCINLLTVPEQGSIRV 77 +++I++L K+FG + VL +SL V KG +VA+IG SGSGKSTLLRC+N L + G I+V Sbjct: 4 IVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIQV 63 Query: 78 GAQDFTFGSKASKPLKDRELARFRTNTGMVFQHFNLFPHMTALENVMEGMLTVLRKPKAE 137 D K L REL R G+VFQ +NLFPH+T N+ + T+ + + Sbjct: 64 CGHDIHHPDK----LNLREL---RKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQ 116 Query: 138 ARAYALELLQKVGLSDRADIYPQRLSGGQKQRVAIARALAMRPGVMLFDEATSALDPELV 197 A+ A ++LQ VGL ++ D YP++LSGGQ QRVAIAR+LAM P +MLFDE TSALDPEL Sbjct: 117 AKTIAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELT 176 Query: 198 GEVLNVIRSLAADGMTMILVTHEIAFAREVADQVIFMRDGVVVEAGPPSQVIDNPQQAAT 257 EVL V+ LA GMTM+LVTHE+AFAR++AD ++FM G V E GPP ++ +P+ A Sbjct: 177 AEVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAEL 236 Query: 258 QSFLT 262 Q F++ Sbjct: 237 QKFVS 241 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 766,834 Number of extensions: 29860 Number of successful extensions: 556 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 308 Number of HSP's successfully gapped: 144 Length of query: 266 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 182 Effective length of database: 1,222,130 Effective search space: 222427660 Effective search space used: 222427660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)