BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0031.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D...    55   3e-09

>gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory
           DNA-binding transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score = 54.7 bits (130), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 6/107 (5%)

Query: 23  SLERLGTTLPDGVIVGYTVKLGQEAQDSGLLAYVGITVEAKTARDVLKRFKR----IPEI 78
            +ER+     DGVI GY  ++  E+  + LL +V IT+  K+  ++ ++F+R    IPE+
Sbjct: 44  CIERVRRMERDGVITGYYARVNPESLGATLLVFVEITLNHKSG-NMFEQFRREVLRIPEV 102

Query: 79  EQLCSVSGEFDYVAWLRAGSAEQLDKLLDDI-GEIEGVRKTTTSIVL 124
           ++   VSG+FDY+   R     +  KLL DI  ++ G  ++ + +V+
Sbjct: 103 QECHLVSGDFDYLIKARIRGMAEYRKLLGDILLQLPGAAQSKSYVVM 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 382,707
Number of extensions: 14655
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)