BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0013.p (127 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 105 2e-24 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 86 7e-19 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 84 5e-18 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 82 2e-17 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 82 2e-17 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 105 bits (261), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/131 (53%), Positives = 86/131 (65%), Gaps = 7/131 (5%) Query: 1 MDDVVASVKRVSDIVGEISFASQEQSSGIEQVNQAITHMDEVTQQNAALVEQAAAAAQSL 60 + +VV+SV+RV+D++ EIS AS EQ+ GIEQVNQAIT MDEVTQQNAALVE+AA+A+QSL Sbjct: 440 ISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQQNAALVEEAASASQSL 499 Query: 61 QDQSANLAQVVGVFRL---NSQDAPRLAKPAGPVATVAPRIGAPAVRKXTVAPRIGAPAV 117 Q+ L+++VGVFRL Q P +A A PR A A T P A AV Sbjct: 500 SHQAQRLSELVGVFRLPGAARQQVPEVAVVATAAPAYTPRRPAVAGATSTATP---ALAV 556 Query: 118 RTG-DGDWETF 127 G D WETF Sbjct: 557 AQGPDEQWETF 567 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 86.3 bits (212), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/141 (51%), Positives = 86/141 (60%), Gaps = 17/141 (12%) Query: 1 MDDVVASVKRVSDIVGEISFASQEQSSGIEQVNQAITHMDEVTQQNAALVEQAAAAAQSL 60 M++VVASVKRV+D+V EI+ AS EQS GIEQ+NQAI MDEVTQQNAALVEQAAAAAQSL Sbjct: 439 MEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNAALVEQAAAAAQSL 498 Query: 61 QDQSANLAQVVGVFRLNSQDAPR---LAKPAGPVATVAP-----------RIGAPAVRKX 106 Q+QS L+ VG+FRL + A + L+ P VAP R APA Sbjct: 499 QEQSGRLSDTVGIFRLGNDHAHQPSPLSAPVQRSVQVAPARPVLARKPVTRTSAPA---K 555 Query: 107 TVAPRIGAPAVRTGDGDWETF 127 ++ DG WE F Sbjct: 556 SIPAAQPVAQAALADGQWEQF 576 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 83.6 bits (205), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/142 (54%), Positives = 85/142 (59%), Gaps = 16/142 (11%) Query: 1 MDDVVASVKRVSDIVGEISFASQEQSSGIEQVNQAITHMDEVTQQNAALVEQAAAAAQSL 60 M +VV SV+RV+DIVGEIS ASQEQS GIEQVN AI MDEVTQQNAALVE+AAAAAQSL Sbjct: 439 MSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNAALVEEAAAAAQSL 498 Query: 61 QDQSANLAQVVGVFRLNSQ-DAPRLAKP--AGPVATVAPRIGAPAVR------------K 105 Q+Q+ L Q VG F+L Q D P P A VA A APA R K Sbjct: 499 QEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAVRHAPATRPAATLAASAAPAK 558 Query: 106 XTVAPRIGAPAVRTGDGDWETF 127 R+ A G G WE F Sbjct: 559 PASGSRLPGGAAEDG-GSWEQF 579 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 82.0 bits (201), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 67/133 (50%), Positives = 84/133 (63%), Gaps = 6/133 (4%) Query: 1 MDDVVASVKRVSDIVGEISFASQEQSSGIEQVNQAITHMDEVTQQNAALVEQAAAAAQSL 60 M++VVASVKRVSDIV EI+ A EQ+ GIEQ+N A+ MDE TQQNAALVEQAAAAA++L Sbjct: 439 MNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDENTQQNAALVEQAAAAAKAL 498 Query: 61 QDQSANLAQVVGVFRLNSQDAP----RLAKPAGPVATVAPRIGAPAVRKXTVAPR--IGA 114 Q+Q+ L++ V VFRL++Q P R A A P + P A A + V R Sbjct: 499 QEQAGRLSETVSVFRLDAQHVPVVVSRAAATAQPERDITPARPALAQSRSKVMARPAHSN 558 Query: 115 PAVRTGDGDWETF 127 + GDWE F Sbjct: 559 TSASAEQGDWEQF 571 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 81.6 bits (200), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/107 (59%), Positives = 77/107 (71%), Gaps = 6/107 (5%) Query: 1 MDDVVASVKRVSDIVGEISFASQEQSSGIEQVNQAITHMDEVTQQNAALVEQAAAAAQSL 60 M +VV SV+RV+DIVGEI+ AS+EQS+GIEQVN+AIT MDEVTQQNAALVE+AAAAAQSL Sbjct: 440 MSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEEAAAAAQSL 499 Query: 61 QDQSANLAQVVGVFRLNSQDAPRLAKPAGPVATVAPRIGAPAVRKXT 107 Q Q+ NL V +F++ + KPA PR APA R T Sbjct: 500 QAQATNLVGAVSIFKIEAHQVAPAGKPASK-----PR-AAPAARPVT 540 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 326,099 Number of extensions: 10735 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 61 Length of query: 127 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 52 Effective length of database: 1,264,745 Effective search space: 65766740 Effective search space used: 65766740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 125 (52.8 bits)