BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0011.p
         (146 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate A...    70   5e-14
gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte...    65   3e-12
gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte...    64   4e-12
gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A...    56   1e-09

>gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score = 70.5 bits (171), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 13  AWVVPDPRLADIEQNIGARPLVTASRLTPQYSFYVAPAKFASAYPAILRLTLDKLNDTEQ 72
           AWV  DP LA +++    R L     +     +Y+A A FA A P +LR+  D+L  T  
Sbjct: 192 AWVTWDPFLAGVQRQSQVRILSDGRGVADYQRYYLASASFAQARPEVLRVVFDELQKTGH 251

Query: 73  YAREHADETARFLEKDTRVPLKVWQLALTRQAWGVAYPLPPNIVEAQQEVADTFFRYKLI 132
           + ++H  E A FL     +     +LA +R+++ V    P  + E QQ +ADTFF   L+
Sbjct: 252 WVKQHPKEAAAFLAPLWGLDADTIELANSRRSYEVRAVRPEALGE-QQRIADTFFAAGLL 310

Query: 133 PKAVQIKDASV 143
           P+ +   D ++
Sbjct: 311 PRKINTNDVAI 321


>gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 327

 Score = 64.7 bits (156), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 1/129 (0%)

Query: 13  AWVVPDPRLADIEQNIGARPLVTASRLTPQYSFYVAPAKFASAYPAILRLTLDKLNDTEQ 72
           AW + DP  A  E+ +GAR L T       + F+++   FA+  P + ++ L++++   +
Sbjct: 197 AWAIWDPFQAAAEKQVGARRLATGVGAVNHHQFFLSARPFAAKNPQVEKILLEEISREGE 256

Query: 73  YAREHADETARFLEKDTRVPLKVWQLALTRQAWGVAYPLPPNIVEAQQEVADTFFRYKLI 132
           + R H  + A  L     +   + +  L R A  V  P+   ++  QQ++AD F+  KLI
Sbjct: 257 WVRTHTAQAAAQLAPIQGLDADIIETGLKRYAH-VYKPVDAQVLAEQQKIADAFYELKLI 315

Query: 133 PKAVQIKDA 141
           PK +++ DA
Sbjct: 316 PKPLKVSDA 324


>gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 64.3 bits (155), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 1/130 (0%)

Query: 13  AWVVPDPRLADIEQNIGARPLVTASRLTPQYSFYVAPAKFASAYPAILRLTLDKLNDTEQ 72
           AW + +P LA  +Q + AR L  A  +    ++Y +   +A  +  +LR+ L++L   + 
Sbjct: 203 AWAIWEPYLAAAQQGLKARILADADGVVKNRAYYFSTRDYARDHADLLRIALEELGKIDA 262

Query: 73  YAREHADETARFLEKDTRVPLKVWQLALTRQAWGVAYPLPPNIVEAQQEVADTFFRYKLI 132
           +A+   DE A  L     +P  V  + + R  +G   P+   I++ QQ++ADTF   +LI
Sbjct: 263 WAQARPDEYASELAGILGLPRSVLDVVVRRYHYGT-LPITRAILDEQQQIADTFLDLRLI 321

Query: 133 PKAVQIKDAS 142
           P+ + + +A+
Sbjct: 322 PRKISLLEAA 331


>gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 323

 Score = 56.2 bits (134), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 18  DPRLADIEQNIGARPLVTASRLTPQYSFYVAPAKFASAYPAILRLTLDKLNDTEQYAREH 77
           DP LA  E     R L   + L+   +F++A   F   +  I+R    +L  T Q+ + H
Sbjct: 194 DPFLAGQELATRPRILRDGTGLSNNRTFHLAVPSFVDRHKDIVRTVFAELKKTNQWTQSH 253

Query: 78  ADETARFLEKDTRVPLKVWQLALTRQAWGVAYPLPPNIVEAQQEVADTFFRYKLIPKAVQ 137
             ETA  L     V  KV +LA  R+ +     +   IV  QQ++AD F +  LI   V+
Sbjct: 254 PQETAELLAPQLGVDPKVLRLATERRNY-TTVAVDAGIVAEQQQIADAFLKLGLIKNPVR 312

Query: 138 IKD 140
           ++D
Sbjct: 313 VQD 315


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 454,151
Number of extensions: 16479
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 4
Length of query: 146
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,255,275
Effective search space: 86613975
Effective search space used: 86613975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)