BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0021.0010.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...   167   5e-43
gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido...   100   4e-23

>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1180

 Score =  167 bits (422), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 78/91 (85%), Positives = 86/91 (94%)

Query: 1   MTYKILYNDAVAMTGGQPVDGTTSVPMIAQQMAAEGIKRIALVSEDVSRYSDRSNLPGLV 60
           MTYKILYNDAVAMTGGQPVDGT SVPMIAQQMAAEG++RIALVSED  RY+DRS+LP  V
Sbjct: 542 MTYKILYNDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRYADRSSLPAAV 601

Query: 61  TIHDRKDMDAVQRDMREVPGVTVIIYDQTCA 91
           T+HDRKDMDAVQR++RE+PGVTVIIYDQTCA
Sbjct: 602 TVHDRKDMDAVQRELRELPGVTVIIYDQTCA 632


>gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1199

 Score =  100 bits (250), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 66/91 (72%)

Query: 1   MTYKILYNDAVAMTGGQPVDGTTSVPMIAQQMAAEGIKRIALVSEDVSRYSDRSNLPGLV 60
           +TYKILYNDAVAMTGGQ  DG     MI++Q+AAE ++ I +V+++  +Y   +     V
Sbjct: 546 ITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQWAEGV 605

Query: 61  TIHDRKDMDAVQRDMREVPGVTVIIYDQTCA 91
           TI  R ++DAVQR++RE PGV+ +IYDQTCA
Sbjct: 606 TIRHRSELDAVQRELREQPGVSAMIYDQTCA 636


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 393,262
Number of extensions: 12161
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)