BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0009.p (672 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 1211 0.0 gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 783 0.0 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 1211 bits (3133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/636 (90%), Positives = 608/636 (95%) Query: 1 MIDSPKARLGIIASGKSYLDVLEALSELGIDEDFAAEIGLRLFKVSMPWPLEPEGVREFA 60 MIDSPKARLGIIASGKSYLDVLEALSELGIDE FAAEIGLRLFKVSMPWPLEP+GVREFA Sbjct: 286 MIDSPKARLGIIASGKSYLDVLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFA 345 Query: 61 QGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADF 120 QGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADF Sbjct: 346 QGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADF 405 Query: 121 SVAQIARVIAARIARFHTSDLIKARLAFLDAKDAVLNKAISTPPRPAYYCSGCPHNTSTK 180 SVAQIARVIAARIARFHTSDLIKARLAFLDAKDAVL+KA++TPPRPAYYCSGCPHN+ST+ Sbjct: 406 SVAQIARVIAARIARFHTSDLIKARLAFLDAKDAVLSKAVNTPPRPAYYCSGCPHNSSTR 465 Query: 181 VPEGSFALAGIGCHVMATAIYPEFNKLTTHMGGEGGPWIGQAPFSQVPHVFANLGDGTYF 240 VPEGSFALAGIGCHVMATAIYPEFNKLTTHMGGEG PWIGQAPFS+VPHVFANLGDGTYF Sbjct: 466 VPEGSFALAGIGCHVMATAIYPEFNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYF 525 Query: 241 HSGYLAIRAAVAANVNMTYKILYNDAVAMTGGQPVDGTTSVPMIAQQMAAEGIKRIALVS 300 HSGYLAIRAAVAA VNMTYKILYNDAVAMTGGQPVDGT SVPMIAQQMAAEG++RIALVS Sbjct: 526 HSGYLAIRAAVAAKVNMTYKILYNDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVS 585 Query: 301 EDVSRYSDRSNLPGLVTIHDRKDMDAVQRDMREVPGVTVIIYDQTCAAEKRRRRKKGEYP 360 ED RY+DRS+LP VT+HDRKDMDAVQR++RE+PGVTVIIYDQTCAAEKRRRRKKG+YP Sbjct: 586 EDPGRYADRSSLPAAVTVHDRKDMDAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGDYP 645 Query: 361 DPDQRLFINEAVCEGCGDCGVQSNCTSILPLETEFGRKRAIDQSSCNKDYSCVKGFCPSF 420 DP+QRLFIN AVCEGCGDCGVQSNCTSILPLET+ GRKR IDQSSCNKDYSCVKGFCPSF Sbjct: 646 DPNQRLFINAAVCEGCGDCGVQSNCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSF 705 Query: 421 VTVSGGKLKKSKTGVIKKDSADDFGVLPEPAIPSCDTPFNILINGIGGTGVITIGALMGM 480 VTV+GGKL+KS+TGV +++ DDFG+LP+P +P+CDTPFNILINGIGGTGVITIGALMGM Sbjct: 706 VTVTGGKLRKSRTGVSRQEERDDFGLLPQPVLPACDTPFNILINGIGGTGVITIGALMGM 765 Query: 481 AAHLEGKGASVLDMTGMSQKNGSVTSHVRIARTPQAIRAQRIATGEADLILGCDMLTAGS 540 AAHLEGKGASVLDMTGMSQKNGSVTSHVRIA AIRAQRIATGEADL+LGCDMLTAG+ Sbjct: 766 AAHLEGKGASVLDMTGMSQKNGSVTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGA 825 Query: 541 HDAISKMRPGRTRAVVNVHQQPPGQFAKNPDWQFPFEEVKALIGESVDQQADFIDATRLA 600 DAISKMRPGRTRAVVN+HQQPPGQFA+NPDW+FP EEVKALI ESV QQADFIDATRLA Sbjct: 826 FDAISKMRPGRTRAVVNLHQQPPGQFARNPDWEFPVEEVKALIVESVGQQADFIDATRLA 885 Query: 601 TALMGDSIATNLFMLGYAYQRGELPLTPTPRVRARE 636 TALMGDSIATNLFMLGYA+QRGELPLT +RA E Sbjct: 886 TALMGDSIATNLFMLGYAWQRGELPLTEASLLRAIE 921 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/648 (59%), Positives = 475/648 (73%), Gaps = 19/648 (2%) Query: 3 DSPKARLGIIASGKSYLDVLEALSELGIDEDFAAEIGLRLFKVSMPWPLEPEGVREFAQG 62 DSP+AR+GII +GKSYLD +AL +LGIDE A +IG+RL+KV M WPLE EGVREFAQG Sbjct: 282 DSPRARIGIITAGKSYLDTRQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQG 341 Query: 63 LDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWVAPR----GEWLLTSKA 118 LDEILVVEEKRQ++EYQLKE+LYNWRDDVRPRV+GKFD+ GEW + G WLL + Sbjct: 342 LDEILVVEEKRQILEYQLKEELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATY 401 Query: 119 DFSVAQIARVIAARIARFH----TSDLIKARLAFLDAKDAVLNKAISTPPRP-----AYY 169 + + AQIAR IA RI+R+ ++AR+A+L+AK+A LN IS+ P P ++ Sbjct: 402 ELNPAQIARAIATRISRYFAGHPVEQQVRARVAYLEAKEATLN--ISSKPDPDKDRIPHF 459 Query: 170 CSGCPHNTSTKVPEGSFALAGIGCHVMATAIYPEFNKLTTHMGGEGGPWIGQAPFSQVPH 229 CSGCPHNTSTK+PEGS LAGIGCH M T + E KL THMGGEG W+GQAPF+ H Sbjct: 460 CSGCPHNTSTKLPEGSRGLAGIGCHYMVTWMDRE-TKLFTHMGGEGVTWVGQAPFTDEKH 518 Query: 230 VFANLGDGTYFHSGYLAIRAAVAANVNMTYKILYNDAVAMTGGQPVDGTTSVPMIAQQMA 289 VFANLGDGTYFHSG LA+RA+VAA VN+TYKILYNDAVAMTGGQ DG MI++Q+A Sbjct: 519 VFANLGDGTYFHSGLLAVRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLA 578 Query: 290 AEGIKRIALVSEDVSRYSDRSNLPGLVTIHDRKDMDAVQRDMREVPGVTVIIYDQTCAAE 349 AE ++ I +V+++ +Y + VTI R ++DAVQR++RE PGV+ +IYDQTCA+E Sbjct: 579 AENVRPIIVVTDEPDKYPVGTQWAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASE 638 Query: 350 KRRRRKKGEYPDPDQRLFINEAVCEGCGDCGVQSNCTSILPLETEFGRKRAIDQSSCNKD 409 KRRRRK+ YPDP +R INEAVCEGCGDC VQSNC S+ PLETEFGRKR I+QSSCNKD Sbjct: 639 KRRRRKRNAYPDPAKRAVINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKD 698 Query: 410 YSCVKGFCPSFVTVSGGKLKKSKTGVIKKDSADDFGVLPEPAIPSCDTPFNILINGIGGT 469 YSCV GFCPSFVTV GG+LKK + D LPEP +P P+ IL+ G+GGT Sbjct: 699 YSCVNGFCPSFVTVEGGQLKKPARA--QADVGPALPSLPEPVLPGLAQPYGILVTGVGGT 756 Query: 470 GVITIGALMGMAAHLEGKGASVLDMTGMSQKNGSVTSHVRIARTPQAIRAQRIATGEADL 529 GVITIG ++ MAAH+EG+ SVLDM+G++QK G V SHVR+A I + R+ TG ADL Sbjct: 757 GVITIGQIIAMAAHVEGRACSVLDMSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADL 816 Query: 530 ILGCDMLTAGSHDAISKMRPGRTRAVVNVHQQPPGQFAKNPDWQFPFEEVKALIGESVDQ 589 ++GCD++ S DA+S+M GRT A VN Q P F +NPDWQFP + I + + Sbjct: 817 VIGCDVIVTASRDALSRMGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGR 876 Query: 590 -QADFIDATRLATALMGDSIATNLFMLGYAYQRGELPLTPTPRVRARE 636 +DA R+ATALMGD+IATN+FMLGYA+Q+G +PL+ +RA E Sbjct: 877 DNLSLVDAGRIATALMGDAIATNMFMLGYAWQKGWVPLSEAALLRAIE 924 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,079,734 Number of extensions: 85929 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 270 Number of HSP's successfully gapped: 2 Length of query: 672 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 580 Effective length of database: 1,184,250 Effective search space: 686865000 Effective search space used: 686865000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)