BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0008.p (884 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 1515 0.0 gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 1010 0.0 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 1515 bits (3922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 723/867 (83%), Positives = 796/867 (91%), Gaps = 1/867 (0%) Query: 1 VLEALSELGIDEDFAAEIGLRLFKVSMPWPLEPEGVREFAQGLDEILVVEEKRQMVEYQL 60 VLEALSELGIDE FAAEIGLRLFKVSMPWPLEP+GVREFAQGLDEILVVEEKRQMVEYQL Sbjct: 306 VLEALSELGIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQL 365 Query: 61 KEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAARIARFHTSD 120 KEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAARIARFHTSD Sbjct: 366 KEQLYNWRDDVRPRVIGKFDEKGEWVAPRGEWLLTSKADFSVAQIARVIAARIARFHTSD 425 Query: 121 LIKARLAFLDAKDAVLNKAISTPPRPAYYCSGCPHNTSTKVPEGSFALAGIGCHVMATAI 180 LIKARLAFLDAKDAVL+KA++TPPRPAYYCSGCPHN+ST+VPEGSFALAGIGCHVMATAI Sbjct: 426 LIKARLAFLDAKDAVLSKAVNTPPRPAYYCSGCPHNSSTRVPEGSFALAGIGCHVMATAI 485 Query: 181 YPEFNKLTTHMGGEGGPWIGQAPFSQVPHVFANLGDGTYFHSGYLAIRAAVAANVNMTYK 240 YPEFNKLTTHMGGEG PWIGQAPFS+VPHVFANLGDGTYFHSGYLAIRAAVAA VNMTYK Sbjct: 486 YPEFNKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAAKVNMTYK 545 Query: 241 ILYNDAVAMTGGQPVDGTTSVPMIAQQMAAEGIKRIALVSEDVSRYSDRSNLPGLVTIHD 300 ILYNDAVAMTGGQPVDGT SVPMIAQQMAAEG++RIALVSED RY+DRS+LP VT+HD Sbjct: 546 ILYNDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRYADRSSLPAAVTVHD 605 Query: 301 RKDMDAVQRDMREVPGVTVIIYDQTCAAEKRRRRKKGEYPDPDQRLFINEAVCEGCGDCG 360 RKDMDAVQR++RE+PGVTVIIYDQTCAAEKRRRRKKG+YPDP+QRLFIN AVCEGCGDCG Sbjct: 606 RKDMDAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGDYPDPNQRLFINAAVCEGCGDCG 665 Query: 361 VQSNCTSILPLETEFGRKRAIDQSSCNKDYSCVKGFCPSFVTVSGGKLKKSKTGVIKKDS 420 VQSNCTSILPLET+ GRKR IDQSSCNKDYSCVKGFCPSFVTV+GGKL+KS+TGV +++ Sbjct: 666 VQSNCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLRKSRTGVSRQEE 725 Query: 421 ADDFGVLPEPAIPSCDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQK 480 DDFG+LP+P +P+CDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQK Sbjct: 726 RDDFGLLPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQK 785 Query: 481 NGSVTSHVRIARTPQAIRAQRIATGEADLILGCDMLTAGSHDAISKMRPGRTAAVVNVHQ 540 NGSVTSHVRIA AIRAQRIATGEADL+LGCDMLTAG+ DAISKMRPGRT AVVN+HQ Sbjct: 786 NGSVTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQ 845 Query: 541 QPPGQFAKNPDWQFPFEEVKALIGESVDQQADFIDATRLATALMGDSIATNLFMLGYAYQ 600 QPPGQFA+NPDW+FP EEVKALI ESV QQADFIDATRLATALMGDSIATNLFMLGYA+Q Sbjct: 846 QPPGQFARNPDWEFPVEEVKALIVESVGQQADFIDATRLATALMGDSIATNLFMLGYAWQ 905 Query: 601 RGELPLTEAALLRAIEMNGVAIESNKTSFLWGRRAAVDLARVERIAVPAQPVVIRMPETL 660 RGELPLTEA+LLRAIE+NGVA+++NKT+F WGRRAAVDLARVE+IAVPAQPV++ +P++L Sbjct: 906 RGELPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIAVPAQPVLLHLPQSL 965 Query: 661 DKLIKRRVAFLTDYQDAAYADSFARFVEQVREKEAALNLGDKLTMAVARNLSKLMAYKDE 720 D+LIKRRV+ LTDYQDAAYA F VE VR EAAL DKL AVARNLS+LMAYKDE Sbjct: 966 DQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALG-SDKLATAVARNLSRLMAYKDE 1024 Query: 721 YEVARLYTDGRFMEQLKQQFEGDFSLSFNLAPPLFSKKDAQGRLVKAKYGSWMMSAFKLL 780 YEVARLYT+G+F ++L QQFEGDFSLSF+LAPPL ++KD QG L+KA+YG W+M AFKLL Sbjct: 1025 YEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKDGQGHLLKARYGGWVMQAFKLL 1084 Query: 781 AKFKGLRGGSFDVFGYTEERKTERRLIAEYRDTVTSLLDGLSVDKLALAIEIAQLPEQIR 840 A+ KGLRGG D+FG+TEER+ ER LI +YR V LL L+ LA AIE+AQLPEQ+R Sbjct: 1085 ARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLLPRLTAANLATAIELAQLPEQVR 1144 Query: 841 GYGHVKDKALAQVRGKQDEMLTRYAAA 867 GYGHVK KA+ +R +Q ++L +A A Sbjct: 1145 GYGHVKLKAVHAMRTRQQQLLAVFAQA 1171 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/886 (56%), Positives = 634/886 (71%), Gaps = 26/886 (2%) Query: 3 EALSELGIDEDFAAEIGLRLFKVSMPWPLEPEGVREFAQGLDEILVVEEKRQMVEYQLKE 62 +AL +LGIDE A +IG+RL+KV M WPLE EGVREFAQGLDEILVVEEKRQ++EYQLKE Sbjct: 302 QALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKE 361 Query: 63 QLYNWRDDVRPRVIGKFDEKGEWVAPR----GEWLLTSKADFSVAQIARVIAARIARFH- 117 +LYNWRDDVRPRV+GKFD+ GEW + G WLL + + + AQIAR IA RI+R+ Sbjct: 362 ELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGNWLLPATYELNPAQIARAIATRISRYFA 421 Query: 118 ---TSDLIKARLAFLDAKDAVLNKAISTPPRP-----AYYCSGCPHNTSTKVPEGSFALA 169 ++AR+A+L+AK+A LN IS+ P P ++CSGCPHNTSTK+PEGS LA Sbjct: 422 GHPVEQQVRARVAYLEAKEATLN--ISSKPDPDKDRIPHFCSGCPHNTSTKLPEGSRGLA 479 Query: 170 GIGCHVMATAIYPEFNKLTTHMGGEGGPWIGQAPFSQVPHVFANLGDGTYFHSGYLAIRA 229 GIGCH M T + E KL THMGGEG W+GQAPF+ HVFANLGDGTYFHSG LA+RA Sbjct: 480 GIGCHYMVTWMDRE-TKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRA 538 Query: 230 AVAANVNMTYKILYNDAVAMTGGQPVDGTTSVPMIAQQMAAEGIKRIALVSEDVSRYSDR 289 +VAA VN+TYKILYNDAVAMTGGQ DG MI++Q+AAE ++ I +V+++ +Y Sbjct: 539 SVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVG 598 Query: 290 SNLPGLVTIHDRKDMDAVQRDMREVPGVTVIIYDQTCAAEKRRRRKKGEYPDPDQRLFIN 349 + VTI R ++DAVQR++RE PGV+ +IYDQTCA+EKRRRRK+ YPDP +R IN Sbjct: 599 TQWAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVIN 658 Query: 350 EAVCEGCGDCGVQSNCTSILPLETEFGRKRAIDQSSCNKDYSCVKGFCPSFVTVSGGKLK 409 EAVCEGCGDC VQSNC S+ PLETEFGRKR I+QSSCNKDYSCV GFCPSFVTV GG+LK Sbjct: 659 EAVCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLK 718 Query: 410 KSKTGVIKKDSADDFGVLPEPAIPSCDTPFNILINGIGGTGVITIGALMGMAAHLEGKGA 469 K + D LPEP +P P+ IL+ G+GGTGVITIG ++ MAAH+EG+ Sbjct: 719 KPARA--QADVGPALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRAC 776 Query: 470 SVLDMTGMSQKNGSVTSHVRIARTPQAIRAQRIATGEADLILGCDMLTAGSHDAISKMRP 529 SVLDM+G++QK G V SHVR+A I + R+ TG ADL++GCD++ S DA+S+M Sbjct: 777 SVLDMSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGE 836 Query: 530 GRTAAVVNVHQQPPGQFAKNPDWQFPFEEVKALIGESVDQ-QADFIDATRLATALMGDSI 588 GRT A VN Q P F +NPDWQFP + I + + +DA R+ATALMGD+I Sbjct: 837 GRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAI 896 Query: 589 ATNLFMLGYAYQRGELPLTEAALLRAIEMNGVAIESNKTSFLWGRRAAVDLARV----ER 644 ATN+FMLGYA+Q+G +PL+EAALLRAIE+N + +E NK +F WGR AA D+A V R Sbjct: 897 ATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGR 956 Query: 645 IAVPAQPVVIRMPETLDKLIKRRVAFLTDYQDAAYADSFARFVEQVREKEAAL---NLGD 701 + AQ + + TLD+L++RRVAFLTDY +AAYA S+ FVEQVR +E+AL G Sbjct: 957 NGMSAQVIEFKRTPTLDELVERRVAFLTDYLNAAYARSYRDFVEQVRARESALGEAGRGL 1016 Query: 702 KLTMAVARNLSKLMAYKDEYEVARLYTDGRFMEQLKQQFEGDFSLSFNLAPPLFSKKDAQ 761 KL+ AVA L KLMAYKDEYEVARL+ D F ++ FEGD+ L F+LAPPL +K+D + Sbjct: 1017 KLSRAVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDK 1076 Query: 762 GRLVKAKYGSWMMSAFKLLAKFKGLRGGSFDVFGYTEERKTERRLIAEYRDTVTSLLDGL 821 G L K +GSWMM F +LA+ + LRG + D F YTEER+ ER LI EYR T++ LLD L Sbjct: 1077 GHLRKQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITEYRATLSRLLDRL 1136 Query: 822 SVDKLALAIEIAQLPEQIRGYGHVKDKALAQVRGKQDEMLTRYAAA 867 + + L +A++PE+IRGYGHVK++ L KQ +L + A Sbjct: 1137 TPENLEQITAVARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQA 1182 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,643,630 Number of extensions: 108477 Number of successful extensions: 373 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 365 Number of HSP's successfully gapped: 2 Length of query: 884 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 790 Effective length of database: 1,174,780 Effective search space: 928076200 Effective search space used: 928076200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)