BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0094.p
         (344 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis pro...   504   e-144

>gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 553

 Score =  504 bits (1298), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/321 (76%), Positives = 278/321 (86%), Gaps = 5/321 (1%)

Query: 1   VVAGEVRQLAQRTKEATDDIGAMVRSITEEAERASGGMQSLSAKVLEASQNVERVHGFLG 60
           VVAGEVRQLAQRTKEATDDIG MVR+ITEEAERA+ GM SLS++VLEA+QNVE+VHG L 
Sbjct: 223 VVAGEVRQLAQRTKEATDDIGTMVRAITEEAERAASGMNSLSSRVLEAAQNVEKVHGLLN 282

Query: 61  NIERSAGISEEEIQQIARASREHVETTHRIAEAILKIRDGMLATDIELPRVAASAMALSE 120
           +IERSA  S+E+I++IA ASREHV+TT  IA+AI  IR+GML TD ELPRVAASAM LSE
Sbjct: 283 SIERSASQSQEQIEEIAVASREHVQTTQEIADAITDIRNGMLQTDTELPRVAASAMQLSE 342

Query: 121 RAELVYDAIAASNAKTQHDDIQKVATAAAKRIGKLFEEAIGAGRISEAALFDRTYKPLPN 180
           RAE V++AI    A+  HDDI+  A  AA  +GKLFEE+I AG I+EAALFDR YKP+PN
Sbjct: 343 RAEAVFEAIVEGGARGGHDDIRIAAADAAAAVGKLFEESIRAGVITEAALFDRHYKPIPN 402

Query: 181 TNPPKHTTQFDAFTDRVLPDVQEAILESMPQLAYAGAVDNNGYFPTHNKKFSKPLTGDYD 240
           T+P KH++QFDAFTDRVLP +QEA+LE MPQLAYAGAVDNNGYFPTHNKKFS+PLTG+YD
Sbjct: 403 TSPQKHSSQFDAFTDRVLPAIQEALLERMPQLAYAGAVDNNGYFPTHNKKFSQPLTGNYD 462

Query: 241 TDLVNNRTKRIFSDRTGKRCGANTKPFLLQTYKRDTGEVMHDLSVPIYVNGKHWGGFRVG 300
            DLVNNRTKRIFSDRTGKRCG+NTKPFLLQTYKRDTGEVMHDLSVPI+V+GKHWGGFRVG
Sbjct: 463 VDLVNNRTKRIFSDRTGKRCGSNTKPFLLQTYKRDTGEVMHDLSVPIHVHGKHWGGFRVG 522

Query: 301 YRSSQAQEAAPVQAVAATSPA 321
           YRSS     AP  AV AT+PA
Sbjct: 523 YRSSH----APAPAV-ATTPA 538


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.128    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 911,214
Number of extensions: 34832
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,212,660
Effective search space: 312866280
Effective search space used: 312866280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)