BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0087.p (115 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 225 6e-61 gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H... 142 7e-36 gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [H... 139 5e-35 gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r... 135 8e-34 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 94 3e-21 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 225 bits (574), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 110/115 (95%), Positives = 112/115 (97%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRSDTFDFVVSDWNMPNMDGLTMLQEIRKDP 60 MRRIVRNLLKELGYTNVDEAEDGVQ LQKLRSD FDFVVSDWNMPNMDGLTMLQEIRKDP Sbjct: 17 MRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLTMLQEIRKDP 76 Query: 61 ALAKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEKLEAGG 115 AL+KLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEK+ AGG Sbjct: 77 ALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEKMAAGG 131 >gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 133 Score = 142 bits (358), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 70/112 (62%), Positives = 84/112 (75%), Gaps = 2/112 (1%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRS--DTFDFVVSDWNMPNMDGLTMLQEIRK 58 MRRIV LLKEL YT + EA+DG L+ L S FV++DWNMP MDGLT+L++IR Sbjct: 17 MRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDWNMPVMDGLTLLKKIRS 76 Query: 59 DPALAKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEK 110 PAL+ LPVLM+TAEAKKENIV AAQ GA+GY+VKPF A TL EK+ KI + Sbjct: 77 TPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKEKIEKILAR 128 >gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 139 bits (350), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 68/112 (60%), Positives = 86/112 (76%), Gaps = 2/112 (1%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRSDTF--DFVVSDWNMPNMDGLTMLQEIRK 58 MRRIV LLKEL YT + EA+DG L+ L + FV++DWNMP MDGLT+L++IR Sbjct: 17 MRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDWNMPVMDGLTLLKKIRA 76 Query: 59 DPALAKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEK 110 P++A LPVLM+TAEAKKENIV AAQ+GA+GY+VKPF AATL +K+ KI + Sbjct: 77 TPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKDKIEKILAR 128 >gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 135 bits (340), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 66/117 (56%), Positives = 86/117 (73%), Gaps = 2/117 (1%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRSDTF--DFVVSDWNMPNMDGLTMLQEIRK 58 MRRI+ LLKEL Y V +A+DG + L S FV++DWNMP MDGL +L++IR+ Sbjct: 16 MRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNMPGMDGLGLLKKIRE 75 Query: 59 DPALAKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIFEKLEAGG 115 P L +LPVLMV+AEAKKENIV AA+ GA+GY+VKPF AATLD+K+ KI ++ + G Sbjct: 76 TPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISKILQRRSSMG 132 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 94.0 bits (232), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 49/108 (45%), Positives = 70/108 (64%), Gaps = 1/108 (0%) Query: 1 MRRIVRNLLKELGYTNVDEAEDGVQGLQKLRSDTFDFVVSDWNMPNMDGLTMLQEIRKDP 60 +R++V LK GY NV EA DGV L+K +S TFD V++D NMP MDGLT+++ +R+ Sbjct: 14 LRQMVVFSLKAAGY-NVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLTLIRSLRELT 72 Query: 61 ALAKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIF 108 + A++P+LM+T E E AGANG++VKPF L E + K+ Sbjct: 73 SYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 333,520 Number of extensions: 11734 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 27 Length of query: 115 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 42 Effective length of database: 1,274,215 Effective search space: 53517030 Effective search space used: 53517030 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)