BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0086.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311340|ref|YP_003775432.1| chemotaxis phosphatase CheZ [He...   303   5e-84
gi|300312395|ref|YP_003776487.1| chemotaxis phosphatase [Herbasp...   142   2e-35

>gi|300311340|ref|YP_003775432.1| chemotaxis phosphatase CheZ
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  303 bits (777), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 150/206 (72%), Positives = 171/206 (83%)

Query: 11  PDAPVAEQQDQFLARIGHMTRSLHDNLRGLGFDRLLEKAASDMPDARDRLEYVAMMTEKA 70
           P A  A   ++ L RIGHMTR+LHD+LRGLGFDRLLEKAASDMPDARDRLEYVA MTE+A
Sbjct: 11  PAAEGAGVSEEVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQA 70

Query: 71  AQRVLTATETAGPMQDAIGDGAGTLAAEWKAVTDAPFSESDYRALAEKTQAYLGATRENV 130
           AQRVL ATE A P+QD I +GA  L A+W A T   FSE+  R LA +T ++L    E+ 
Sbjct: 71  AQRVLNATELASPLQDRISEGATDLKAQWDAATAGSFSEAHCRELAARTSSFLAQASEDS 130

Query: 131 SLTKQQLLDIMMAQDFQDLTGQVIKRVTEVAHDIESQLVQLLVDYSPPEAKREDSGLLNG 190
           S+TKQQLLDIMMAQDFQDLTGQVIKRVT++AHD+ESQLVQLLVDY+P EAKRED+GLLNG
Sbjct: 131 SVTKQQLLDIMMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYAPSEAKREDTGLLNG 190

Query: 191 PQINPTGHNVIANQSQVDDLLESLGF 216
           PQI+PTG +VIANQ QVDDLLESLGF
Sbjct: 191 PQIDPTGKDVIANQGQVDDLLESLGF 216


>gi|300312395|ref|YP_003776487.1| chemotaxis phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  142 bits (359), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/198 (39%), Positives = 118/198 (59%), Gaps = 9/198 (4%)

Query: 24  ARIGHMTRSLHDNLRGLGFDRLLEKAASDMPDARDRLEYVAMMTEKAAQRVLTATETAGP 83
           AR+G + R LHD++R LG+DR L   AS + DA+ RLE++A +TE+AA +VL A ++  P
Sbjct: 53  ARLGGIVRLLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSGMP 112

Query: 84  MQDAIGDGAGTLAAEWKAVTDAPFSESDYRALAEKTQAYLGATRENVSLTKQQLLDIMMA 143
            QD + + A  +   W  +     S  +++ LA  +Q +  A  E+    K ++L+IMMA
Sbjct: 113 AQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIMMA 172

Query: 144 QDFQDLTGQVIKRVTEVAHDIESQLVQLLVDYSPPEAK-----REDSGLLNGPQINPTGH 198
           QDFQD+TGQ+IK++  +    E +L QLL D +PPE +      +   L+NGP    T  
Sbjct: 173 QDFQDITGQLIKKIVGITTTAERELAQLLRDNAPPEVRAQIEAEKPVSLMNGPASPGTAM 232

Query: 199 NVIANQSQVDDLLESLGF 216
                Q+ VDDLL+SLGF
Sbjct: 233 ----GQTDVDDLLDSLGF 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 641,275
Number of extensions: 23918
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)