BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0083.p
         (487 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-bind...   695   0.0  
gi|300313432|ref|YP_003777524.1| signal recognition particle GTP...    57   2e-09

>gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/504 (71%), Positives = 398/504 (78%), Gaps = 27/504 (5%)

Query: 1   MNVKKFIAGSSRDAWRQVREALGPDAVILSNRNIDDGVEILAMANEDMSSLVVPAMSKDA 60
           MNVKKFIA SSR+AWRQVREALGPDAVILSNRNI DGVEILAMANEDM++LV P  ++D 
Sbjct: 1   MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60

Query: 61  VPRPAVRR-------PPAPQQSLQAAVPRTRVEQQAQSPGASMPVEHNTAQADA------ 107
             RP           PPA Q    A +     + +    GA +  +  + ++ A      
Sbjct: 61  SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQARPAREGAPLLDQPGSERSQARAEAAP 120

Query: 108 ----RVWRTRNAARASAKEQQAQALTPAQVAAGPKAAAASAAAVRPQQAGVMAEFDGKDY 163
               RVWR+R   R S   Q+  A          +         RP+ A  + EFDGKDY
Sbjct: 121 AADARVWRSRT--RDSGNAQRRAAAPAGAPQGQEQEQD------RPRSA--LPEFDGKDY 170

Query: 164 DEILSDVMSEIRSMRGVLETQLAEISWGGTQKREPAKAAIMREMLAAGFSASLSRLITEN 223
           DEILS+VMSEIRSMRGVLETQLAEISWGGTQKREP K  +++EMLAAGFSASLSRLITEN
Sbjct: 171 DEILSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITEN 230

Query: 224 LPQSPKSQDAMFWVKSVLAKNLMTMANENELLEEGGVYALVGPTGVGKTTTTAKLAARCV 283
           LP + KSQD MFWVKSVLA+NL T+ANENELLE GGV+A+VGPTGVGKTTTTAKLAARCV
Sbjct: 231 LPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCV 290

Query: 284 MRHGPGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDESDLRIALDELRGKHTVLID 343
           MRHG GKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE+DLRIAL+EL+GKHTVLID
Sbjct: 291 MRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLID 350

Query: 344 TAGMGQRDQMVAEQAAMLSGAGTDIKRLLCLNATATGGTLNEVVSAYSGDGLAGCIITKL 403
           TAG+GQRDQMVAEQ AML+GAG DIKRLLCLNATATGGTLNEVV AYS  GLAGCIITKL
Sbjct: 351 TAGVGQRDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKL 410

Query: 404 DEAATIGNVLDVVIRQKLNLYYVANGQRVPEDLHVANRLYLADRAFKLKRETAPFEFQDA 463
           DEAATIGNVLDVVIR KLNL+YVANGQRVPEDLHVAN+LYLADRAFK KRETAPFEFQ+ 
Sbjct: 411 DEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEG 470

Query: 464 ELPVVVGPTATAMNDKSLREVILG 487
           ELP V+GPTA +MNDK LREV  G
Sbjct: 471 ELPGVIGPTAMSMNDKGLREVSFG 494


>gi|300313432|ref|YP_003777524.1| signal recognition particle GTPase
           involved in cell division protein [Herbaspirillum
           seropedicae SmR1]
          Length = 321

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 14/198 (7%)

Query: 260 VYALVGPTGVGKTTTTAKLAARCVMRHGPGKLALITTDGYRIGGYEQLRIYGKILGVMVH 319
           V  + G  G GKTTT  KLA   +  HG   L L   D +R    EQL ++G+   V V 
Sbjct: 123 VMMIAGVNGAGKTTTIGKLALH-LQAHGQSVL-LAAGDTFRAAAREQLAVWGERNNVQVI 180

Query: 320 SVKDESDLRIALDEL-----RGKHTVLIDTAG-MGQRDQMVAEQAAMLSGAGTDIKR--- 370
           + +      +A D +     RG H V++DTAG +  +  ++ E   +    G  +     
Sbjct: 181 AQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPH 240

Query: 371 --LLCLNATATGGTLNEVVSAYSGDGLAGCIITKLDEAATIGNVLDVVIRQKLNLYYVAN 428
             LL ++       L +V +     GL G ++TKLD  A  G +  +   + + LY++  
Sbjct: 241 EVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGV 300

Query: 429 GQRVPEDLHVANRLYLAD 446
           G+++ EDL   N     D
Sbjct: 301 GEQI-EDLQAFNATEFVD 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,268,864
Number of extensions: 46727
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 2
Length of query: 487
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 398
Effective length of database: 1,198,455
Effective search space: 476985090
Effective search space used: 476985090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)