BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0080.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312290|ref|YP_003776382.1| flagellar motor component prote...    65   6e-12

>gi|300312290|ref|YP_003776382.1| flagellar motor component protein
           [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score = 64.7 bits (156), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 114/263 (43%), Gaps = 22/263 (8%)

Query: 8   GLLLALGGILLGLLLEGGHLGSILQPTAFLIVFAGTIGAVLLQTRLDNFVHGVKLLSWVF 67
           G ++ +  +  G  + GGHLG++ QP   L++     GA L+          +K L  VF
Sbjct: 6   GYIVVMASVFGGFAMAGGHLGALFQPIELLMIGGAAGGAFLVGNNGKAIKATLKALPTVF 65

Query: 68  SPPVHNHRKLIDNITVWSGI---SRREGLLHLEEHMND-SSDP----------------F 107
               +     ++ + +   I   SR+EGL+ +E  + +  S P                F
Sbjct: 66  KGSAYTKALYMELMALLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEF 125

Query: 108 VKKGLRLLIDGITPA-KLLDILEVDTTAYETRQRQALKIWEAAGGYSPTIGILGAVLGLI 166
           +   LRL++ G   A ++ ++++ +   +       +      G   P  GI+ AV+G++
Sbjct: 126 MTDYLRLMVSGNMDAFQIENLMDNEIETHHHEGEIPVHCIAKLGDGMPAFGIVAAVMGVV 185

Query: 167 HVMENLS-DPAKLGGGIAVAFVATIYGVGLANLFFLPVANKLKELLAVEVNRRDMVADSL 225
           H ME++   P++LG  IA A V T  G+ LA  F  P+++ L++ L         V  +L
Sbjct: 186 HTMESVGIPPSELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTL 245

Query: 226 FGIASGDNPRVIQERAESYFVTT 248
               +G  P +  E       +T
Sbjct: 246 LASLNGYAPALSIEFGRKVLFST 268


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 724,699
Number of extensions: 29763
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)