BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0079.p
         (283 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312289|ref|YP_003776381.1| flagellar motor component prote...    65   9e-12
gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser...    57   1e-09

>gi|300312289|ref|YP_003776381.1| flagellar motor component protein
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score = 64.7 bits (156), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 126/296 (42%), Gaps = 52/296 (17%)

Query: 16  WLVSYADFITLLFAFFVVMYAISQVNEGKYKILADSLINAFGKEPVSTAPIVVQAGGQGT 75
           W ++YADF+T + AFF++M+ +    +G    +A+     + K P+  A  +    G G 
Sbjct: 26  WKIAYADFVTAMMAFFLLMWLLGSTAKGDLNGIAE-----YFKTPLKVA--MAGGSGSGD 78

Query: 76  QQSVAPKITLQKPRSNEALRREKERMTDMARDILQVLAPL-------VQEGKVRVTQ--- 125
             +V P       R +  LR+ +  +T   +++ Q    L       ++E K R+ +   
Sbjct: 79  ANTVLPGGGKDLTRQDGQLRKGETDVTARKQNLKQAQQELEKMERTRLEELKSRLEKAID 138

Query: 126 ----------------TSVGVNVEI---NANVLFAPGDAKVSRESEETLIAIARVLKNDD 166
                           TS G+ ++I       +FA   A++   ++E L  I R L +  
Sbjct: 139 SNPTLKQFKNQLLIDITSEGLRIQIVDEKNRPMFALASAQLQPYTKEILHEIGRTLNDVP 198

Query: 167 HAIQIEGHTDNTQINTS-VFPSNWELSAVRASTVARLFNNQGIADLRLTAVGHGSNQAVA 225
           + I + GHTD T  +      SNWELSA RA+   R     G+ + ++  V   S+  + 
Sbjct: 199 NKISLSGHTDATPYSKGEKGYSNWELSADRANASRRELIIGGMDESKVLRVVGLSSAVLL 258

Query: 226 SNDTPEGRLRNRRXAPYVGRVDVMILSRLAEQATE-------VPFAEEGGKVAQPI 274
             + P          P   R+ ++++++ AE+  E       VP     G+V Q +
Sbjct: 259 DKEDP--------FNPINRRISIIVMNKKAEEMVEKDSGSLNVPTDASDGEVQQGL 306


>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 121 VRVTQTSVGV--NVEINANVLFAPGDAKVSRESEETLIAIA-RVLKNDDHAIQIEGHTDN 177
           +RV+ +  GV  N   N  V F  G A ++ E +  L  IA  +L+     ++I G+TDN
Sbjct: 144 LRVSTSEQGVLDNTLANRVVSFESGRATLTPEGKRILDEIAATMLQLKGRRVEIIGNTDN 203

Query: 178 TQINTSVFPSNWELSAVRASTVARLFNNQGIADLRLTAVGHGSNQAVASNDTPEGRLRNR 237
             +  S    N  LS  RA  V    + +G+ D  LT  G G ++ VASN T EGR RNR
Sbjct: 204 EGLRAS----NISLSLARADAVKAYLSTKGVDDSLLTTSGQGPDRPVASNATSEGRARNR 259

Query: 238 R 238
           R
Sbjct: 260 R 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 769,810
Number of extensions: 28747
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 4
Length of query: 283
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,222,130
Effective search space: 243203870
Effective search space used: 243203870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)