BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0078.p
         (134 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311346|ref|YP_003775438.1| flagellar biosynthesis/type III...   142   1e-35

>gi|300311346|ref|YP_003775438.1| flagellar biosynthesis/type III
           secretory pathway chaperone protein [Herbaspirillum
           seropedicae SmR1]
          Length = 152

 Score =  142 bits (357), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 102/135 (75%), Gaps = 3/135 (2%)

Query: 1   VAALQQEQDLLSGNGDADKIPEIINDKANIVANMATLADQRHKALAALGFTAGENGMQSW 60
           V  L+QEQ LL+ +   + + E+I++KA IVA+MATLA  RH  L  LG++  E GMQ W
Sbjct: 18  VEKLRQEQALLA-DATPEGLTEVISEKATIVADMATLAGNRHALLGQLGYSEDEAGMQKW 76

Query: 61  IEQHGSAEDKQVWEELFALAQ-SRELNRLNGLLIGKQMAINQNAMNILQGKSN-GSFYGP 118
           + +HGS  D++ W  LF LAQ ++ELNR+NGLLIGK++++NQ+A+ ILQGK+  G+FYGP
Sbjct: 77  MNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSALTILQGKTGAGNFYGP 136

Query: 119 DGQSSLRSSGRPLGI 133
           DGQ+S+ +SGR LG+
Sbjct: 137 DGQNSISASGRRLGV 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 444,321
Number of extensions: 16473
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,260,010
Effective search space: 73080580
Effective search space used: 73080580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)