BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0077.p
         (60 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311347|ref|YP_003775439.1| anti-sigma-28 factor protein [H...    84   2e-18

>gi|300311347|ref|YP_003775439.1| anti-sigma-28 factor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score = 84.3 bits (207), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 49/59 (83%)

Query: 1   LSSQYQSLGVKAAATGSTFDAKKVAEIKAAIANGTFQVDPEKVANGLFDTVKDLIGSRK 59
           LS+ YQSL  K +++  +FDAKKVAEIKAAIANGTFQ+D +KVANGL DTVK LI +R+
Sbjct: 62  LSATYQSLETKVSSSSGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARR 120


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.126    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 136,656
Number of extensions: 2936
Number of successful extensions: 9
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 60
Length of database: 1,619,870
Length adjustment: 33
Effective length of query: 27
Effective length of database: 1,463,615
Effective search space: 39517605
Effective search space used: 39517605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 123 (52.0 bits)