BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0076.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring for...   301   3e-83

>gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring
           formation protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  301 bits (772), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 172/209 (82%)

Query: 32  PPRQDLGALQKIAEQFMKVQTTGLSGAVNIAVEPADSRLNLAACTSPQAFMPNGGRLWGR 91
           P RQDL  +Q+ AEQF+K QT GL G++ I  +P D R+ L AC  PQAFMPNG RLWGR
Sbjct: 46  PQRQDLQIVQQTAEQFLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGR 105

Query: 92  TTIGVKCIAPSPWTIYLRATVQVIAEYIVTAAPLAQGQIIGPNDITKVKGDLSNLPNGII 151
           T++GVKC+AP+PWTIY+RA VQVI++Y++ A PLAQGQ I  +DI++V+GD+S LP G+I
Sbjct: 106 TSVGVKCVAPAPWTIYVRANVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVI 165

Query: 152 TDSSQAIGRTANISLALGAPIRQDALRSNRVVQQGQAVRVVSTGPGFQITTEARALTNGS 211
           T+ SQ IGR A +SL  G P+R DA+R+ RVVQQGQ+VRVVS GPGFQI+TEARAL+N +
Sbjct: 166 TEESQVIGRVAGMSLRAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNAN 225

Query: 212 EGQMVQAKTSAGQVVSGIAKAGGILEINY 240
           EGQM QA+T+AGQVVSGIAKAGGILEINY
Sbjct: 226 EGQMTQARTAAGQVVSGIAKAGGILEINY 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 626,988
Number of extensions: 24159
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)