BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0071.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311353|ref|YP_003775445.1| flagellar basal body rod protei...   396   e-112
gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protei...    87   1e-18

>gi|300311353|ref|YP_003775445.1| flagellar basal body rod protein
           FlgF [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  396 bits (1018), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/247 (78%), Positives = 223/247 (90%), Gaps = 2/247 (0%)

Query: 10  MDRVIYTAMSGAKHTMEQQATASNNLANATTTGFRSQLDTFRAVPVVGGEGLATRTFVVD 69
           MDR++YTAMSGAKHT+EQQATASNNLANATTTGFR+QL+TFRA PVVG +GL TRTFVVD
Sbjct: 1   MDRLVYTAMSGAKHTLEQQATASNNLANATTTGFRAQLNTFRAAPVVG-DGLPTRTFVVD 59

Query: 70  STAGTNFALGPIQDTGRALDVAVAGDGWIAVQTADGGEAYTRNGSFKMSENGILQTQTGL 129
           STAG +F+ GPIQDTGRALDVA+ G GWIAVQTADGGEAYTRNGSFK++ENGILQTQ+G 
Sbjct: 60  STAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQSGQ 119

Query: 130 SVMGDGGPISIPPDVTIAIAPDGTVSSIPTMGTPNAVNILGRIKMVNPDEKSLKRGDDGL 189
           +V+GDGGPI+IPPD T+AIA DGTVS+IPT G PNAVN+LGRIK+VNPDEK++KRGDDGL
Sbjct: 120 TVLGDGGPITIPPDATVAIAADGTVSAIPTNGIPNAVNVLGRIKLVNPDEKNMKRGDDGL 179

Query: 190 FRLTAGTQAPPDANVRLVGGALEGSNVNVVDSMVNMINLARQFDLNMKVVTTAQSDADKA 249
           FR   G  A PDANVRL  GALEGSNVNVV++MVNMINL+RQF++NMK++ TA+SDA KA
Sbjct: 180 FRTITGA-AQPDANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKMIQTAESDATKA 238

Query: 250 NQILSLS 256
             ILSLS
Sbjct: 239 TSILSLS 245


>gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protein
           FlgG [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 123/267 (46%), Gaps = 31/267 (11%)

Query: 10  MDRVIYTAMSGAKHTMEQQATASNNLANATTTGFRSQLDTF-----RAVPVVGGE----- 59
           M R ++ + +G      Q    SNNLAN +T GF+     F     + V   G +     
Sbjct: 1   MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60

Query: 60  ----GLATRTFVVDSTAGTNFALGPIQDTGRALDVAVAGDGWIAVQTADGGEAYTRNGSF 115
               GL   T V        F  G +  T    D+A+ G+G+  +   DG  AYTR+G+F
Sbjct: 61  QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120

Query: 116 KMSENGILQTQTGLSVMGDGGPISIPPDVT-IAIAPDGTVSSIPTMGTPNAVNILGRIK- 173
           +    G L T +G ++     PI++P + T + +  DG VS +    T  A   +G I+ 
Sbjct: 121 QTDSQGQLVTSSGYTLQ---PPITVPLNTTKLTVGRDGVVSIMQAGST--ATTQIGTIQV 175

Query: 174 --MVNPDEKSLKRGDDGLFRLTAGTQAPPDANV------RLVGGALEGSNVNVVDSMVNM 225
              +NP    L+   + L+  TA + AP   N        L  G +E SNVNVV+ +VNM
Sbjct: 176 ATFINP--AGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNM 233

Query: 226 INLARQFDLNMKVVTTAQSDADKANQI 252
           I   R +++N K +TT+     K +Q+
Sbjct: 234 IQTQRAYEINSKAITTSDQMLAKLSQL 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 748,418
Number of extensions: 31575
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)