BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0069.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring pro...   328   2e-91
gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring pro...    79   2e-16

>gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  328 bits (841), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/219 (77%), Positives = 194/219 (88%)

Query: 8   MKSLMKLAAIVGMIALAGCETVPDSIVKMPLTAKPQPAAYAPATNGAIFQSAAYRPLLED 67
           MKS++K   + G++A+AGC TVPDSIV  P +A+PQPA+YAP T+GAIFQ A YRPLLED
Sbjct: 1   MKSMLKWVTLAGILAVAGCTTVPDSIVAGPKSARPQPASYAPPTSGAIFQGAVYRPLLED 60

Query: 68  RRARLVGDTLTIVINEKTSAAKSAGSSGSKTGSASAIAPTLFGTSIKELSGSGGSTNKFE 127
           RRARLVGDTLTIVINEKTSA KSA SS SKTG+ ++  PT FGTSIKEL+ +G S+ KF+
Sbjct: 61  RRARLVGDTLTIVINEKTSAGKSAASSASKTGAVNSPVPTFFGTSIKELTANGSSSAKFD 120

Query: 128 DKGAISSSNNFTGTIGVTVIEVMPNGNMVVSGEKQVALDKGVEYVRFSGTVSPDNIATGN 187
           DKGA +SSN FTGTIGVTV+EV+PNGN+VV+GEKQVALDKGVEYVRFSGTVSPDNI TGN
Sbjct: 121 DKGATTSSNTFTGTIGVTVVEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGN 180

Query: 188 TVSSTLVADAKVEYRTNTRVDMAEFMSSLSRFFFSVSPF 226
           TVSSTLVADAKVEYRTNTRVDMA+FMSSL RFFFS+SPF
Sbjct: 181 TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSISPF 219


>gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 79.3 bits (194), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 106/195 (54%), Gaps = 10/195 (5%)

Query: 13  KLAAIVGMIALAGCETVPDSIVKMPLTAKPQPAAYAPATNGAIFQSAAYRPLLEDRRARL 72
           +LA    + AL      P  +V  P + +P         NGAIF+ ++ + L E+  A  
Sbjct: 6   RLAGACTLAALLSACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQ-LFEEPTAYN 64

Query: 73  VGDTLTIVINEKTSAAKSAGSSGSKTGSASAIAPT-------LFGTSIKELSGSGGSTNK 125
           VGD + I I+E  S++  A ++ S+  S +   P        LF T + + + S    N 
Sbjct: 65  VGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLF-TQLYDANYSASGNNT 123

Query: 126 FEDKGAISSSNNFTGTIGVTVIEVMPNGNMVVSGEKQVALDKGVEYVRFSGTVSPDNIAT 185
           F+  G  S++N  +GT+ V+++EV+PN N+VV+GEK++ ++  +  +RFSG V   +I  
Sbjct: 124 FKGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRDI-R 182

Query: 186 GNTVSSTLVADAKVE 200
           G  V+S+ VADA++E
Sbjct: 183 GGIVASSNVADARLE 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.126    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 604,051
Number of extensions: 22396
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)