BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0067.p
         (190 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311356|ref|YP_003775448.1| flagellar basal-body P-ring pro...   312   9e-87

>gi|300311356|ref|YP_003775448.1| flagellar basal-body P-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  312 bits (800), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 156/190 (82%), Positives = 173/190 (91%)

Query: 1   VPSALGQGDTVNLELNDNDFSTASRVVEAVNKRFGFDTAMAQDGRVIRIRAPIGSGDRVA 60
           VPS+LG  D + LELNDNDFSTASRVV+A+NKRFG +TA+AQDGRVIR+RAPI SGDRVA
Sbjct: 187 VPSSLGSSDMIVLELNDNDFSTASRVVDALNKRFGNETAVAQDGRVIRVRAPISSGDRVA 246

Query: 61  FLGALENIDVIPSRVQAKVILNARTGSVVMNQAVTLDTCAVSHGNLSVVINAENSISQPG 120
           FLGALEN+DV P ++ AKVILNARTGSVVMNQ+V LDTCAVSHGNLSVVI A+N++SQP 
Sbjct: 247 FLGALENVDVTPGKLAAKVILNARTGSVVMNQSVMLDTCAVSHGNLSVVIQADNAVSQPN 306

Query: 121 ALSGGQTAANQNAQISISSAPGKVMYLKGGASLAEVVKALNAIGATPQDLLAILQAMKAA 180
           AL+GGQTA  QNAQISI+  PGKVM LKGGASLAEVVKALNAIGATPQDLLAILQAMKAA
Sbjct: 307 ALAGGQTAGVQNAQISINKEPGKVMLLKGGASLAEVVKALNAIGATPQDLLAILQAMKAA 366

Query: 181 GSLRAELEII 190
           GSLRAELE+I
Sbjct: 367 GSLRAELEVI 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 538,141
Number of extensions: 19364
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,241,070
Effective search space: 136517700
Effective search space used: 136517700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)