BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0066.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311357|ref|YP_003775449.1| flagellar basal-body protein Fl...   477   e-136

>gi|300311357|ref|YP_003775449.1| flagellar basal-body protein FlgJ
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  477 bits (1227), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 236/327 (72%), Positives = 267/327 (81%), Gaps = 14/327 (4%)

Query: 1   MINNIKPGNPTESLAADANSLNSLRSAAATQSPESLKGAAKQFEALFLNMMLKSMRDATP 60
           M+N I P NPTESLA DAN LN LR AA   SPES+KGAAKQFEALFLNMM+KSMRDATP
Sbjct: 1   MLNKINPSNPTESLAVDANGLNGLREAAKQNSPESIKGAAKQFEALFLNMMMKSMRDATP 60

Query: 61  QDGMFDSPQTKMFTSMLDQQLSQNMAQRGVGLADMLVRQLSSSLNKPLPTDED------- 113
           Q+G FD+ QTKMFTSMLDQQLSQ +AQRGVGLAD+L RQLS+SL K LP  ++       
Sbjct: 61  QNGPFDNEQTKMFTSMLDQQLSQTLAQRGVGLADVLTRQLSASLPKKLPDAQELDGQTPG 120

Query: 114 GASALPLDIPLANTLSDLDKSRLVQGLANAATYDSTSSQGGSKRKGGQQR----PAHVEA 169
           G   LP+ IPL   +S+ D+++ +Q  A+    ++T   G   R G Q+R    PAHVEA
Sbjct: 121 GDEGLPMGIPLVKDMSEADRAKFIQSFASQQAAENTDQDG---RNGKQRRSTNKPAHVEA 177

Query: 170 FQNRLQADAEAASRITGIPAKFMLAQAALETGWGKKEIRARDGSSAHNLFGIKATGNWTG 229
           FQNRLQADAE AS++TGIPAKFMLAQAALETGWGKKEI  RDG SAHNLFGIKATGNWTG
Sbjct: 178 FQNRLQADAEIASKMTGIPAKFMLAQAALETGWGKKEIITRDGRSAHNLFGIKATGNWTG 237

Query: 230 KTVDATTIEYVNGVAQRKVEKFRAYDSYSEAFQDYAKLLRSNPRYEKVLANAQDAHGFAY 289
           K V+ATTIEY+NG  Q++VEKFRAYDSY++AF+DYA LLRSNPRYEKVLA+AQDAHGFAY
Sbjct: 238 KVVEATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAY 297

Query: 290 GLQRAGYATDPHYAEKLSRIIRQSLSA 316
           GLQRAGYATDPHYAEKLSRIIRQSLSA
Sbjct: 298 GLQRAGYATDPHYAEKLSRIIRQSLSA 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.126    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 802,800
Number of extensions: 28153
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)