BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0063.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311359|ref|YP_003775451.1| flagellar hook-filament junctio...   462   e-131

>gi|300311359|ref|YP_003775451.1| flagellar hook-filament junction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 377

 Score =  462 bits (1190), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/379 (63%), Positives = 286/379 (75%), Gaps = 2/379 (0%)

Query: 1   MRISTSMLYQLSNNELTSMQGSILKLNQQVTQQQTVLLPSDDAVAAARALDLSQTQALND 60
           MRIST M+YQ SNN+LTSMQ   LKL+QQVT QQ VLLPSDD VAAARALD+ QT  LN+
Sbjct: 1   MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60

Query: 61  QYKTNRNNADSSLSQVNAALTSVTAMLTKIKSNITQAGNAAYSNNERANMATELKGNLKE 120
           QYKTNR NA+S+LS V   L S+T MLTK+KSN+  AGNA+YSN ER NMA+E+KGNL E
Sbjct: 61  QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120

Query: 121 MLGFANATDALGNYLFSGFKATTQPFDYDSMGNIVYNGDQGQQTLQVDSTRNMEISVSGQ 180
           +LG+ANA D  GNYLF+GFK+TTQPF  D  G +VYNGDQG  +LQVDSTR M+IS SGQ
Sbjct: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRVMDISASGQ 180

Query: 181 AVFQGAGQDTFKNMQDLITLLQVPVTEAANNADTQAANTFQYPVGSLPAQYPIQAYKTAQ 240
           A+FQG GQD FK M + I +L VPVTEAAN AD  AAN F YP GS     PI AYKT+ 
Sbjct: 181 AIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGS--GLTPIAAYKTSL 238

Query: 241 AALDAAAPTDPNYSTLLTQAANAKLLSDKAEAARTPIPGSQAALTRGLNKLGGAIDLQMN 300
           A L+A +PTDP Y  + T  A  KL SD A+AARTP+ GSQAALTR L      ID  ++
Sbjct: 239 AQLNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASFNTQIDSLLS 298

Query: 301 SVGAATASVGARQSEIDNLNAAGDVLKVQYEQSVNDLLGRNPSDLSANISALSLQQTYLQ 360
           +V  A AS+GARQ+E+DNL+AAG+V K  Y Q++N+LLGRNPSD++  IS  +L QTYL 
Sbjct: 299 NVTTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYLS 358

Query: 361 AAQKSFVVTSSLTLLNYLK 379
           AAQK FV TS L+LLNYLK
Sbjct: 359 AAQKVFVTTSGLSLLNYLK 377


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.122    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 812,912
Number of extensions: 27198
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 131 (55.1 bits)