BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0061.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311363|ref|YP_003775455.1| flagellar biosynthesis protein ...   276   1e-75

>gi|300311363|ref|YP_003775455.1| flagellar biosynthesis protein
           FliR [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  276 bits (705), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/211 (70%), Positives = 185/211 (87%)

Query: 1   MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKLLLGVMTSLVIAPNVPV 60
           M+  +S QLY+W+A FIWP TRILGL+A+APPFGSASVPMLVK+LLGV    VIAP+VP+
Sbjct: 1   MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60

Query: 61  PPALDPMSMTGLLILVQQFIIGAAMGFSVRLVFSAVEMAGEMTSNTMGLGFAVFFDPQSQ 120
           PPA++P SMTG++IL+QQ +IG +MGF++R+VF+AVE AGE TS TMGL FA FFDPQ+Q
Sbjct: 61  PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120

Query: 121 GRTSAISQLFSLLATLVFLSINGHLLLVAVMADSFNTLPITATPVTAEGFHYIALSGARI 180
           GRT+ ISQ+FSLLAT+VFL++NGHL+L+ VMA+SF+TLPIT  P+T EGFH + L GA+I
Sbjct: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180

Query: 181 FSMGLQLSLPMLVALLITNMALGILTRAAPR 211
           FSMGLQLSLP+L+ALLITN ALG+LTRAAP+
Sbjct: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQ 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 608,198
Number of extensions: 24007
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)