BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0060.p
         (83 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311364|ref|YP_003775456.1| flagellar biosynthesis protein ...   120   2e-29

>gi|300311364|ref|YP_003775456.1| flagellar biosynthesis protein
          FliQ [Herbaspirillum seropedicae SmR1]
          Length = 89

 Score =  120 bits (302), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 78/83 (93%)

Query: 1  MTLGRQAMEVTLMIAAPMLFTALVIGLIVSIFQAATQINEATLTFIPKLVGVFLALIIAG 60
          MT+GRQAME+TL+IAAPML TAL+IGL+VSIFQAATQINE TL FIPKL+GVFLA+I+AG
Sbjct: 7  MTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFLAMIVAG 66

Query: 61 PWMLSVMLDYMRLMFTGIPAMVQ 83
          PW+L+V++DYM  MF+GIPAMVQ
Sbjct: 67 PWILTVIVDYMHTMFSGIPAMVQ 89


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.334    0.142    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 208,397
Number of extensions: 6201
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 83
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 29
Effective length of database: 1,364,180
Effective search space: 39561220
Effective search space used: 39561220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 123 (52.0 bits)