BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0059.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein ...   372   e-104
gi|300310129|ref|YP_003774221.1| type III secretion HrcR transme...   135   3e-33

>gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein
           FliP [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  372 bits (956), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 210/225 (93%)

Query: 44  QQGLPAFTSTPAPGGGQTYNLSIQTMLLLTSLSFIPAALLMMTCFTRIVIVLSLLRQALG 103
           QQG+PA  S PAPGGG  Y+L IQTMLLLTSLSF+PAALLMMTCFTRIVIVLSLLRQALG
Sbjct: 20  QQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALG 79

Query: 104 TQSTPPTQVLVGLSLFLTLFVMGPVFDKIYVDAYQPFADNKISMIDAMEKGAAPLKEFML 163
           TQSTPPTQVLVGLSLFLT FVM PVFD+IY DAYQPFA+NKI M++A++KGA PLKEFML
Sbjct: 80  TQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFML 139

Query: 164 KQTRQSDLALYVKLSHSPDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPFLIIDMV 223
           KQTR+SDLALYVKLS  P LQGPEDVPLRLL+PAF+TSELKTAFQI FAIF+PFLIIDMV
Sbjct: 140 KQTRESDLALYVKLSRGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMV 199

Query: 224 VASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQLLIGSLAESFY 268
           VASILMSMGMMMMSPA+VSLPFKLMLFVLVDGWQLLIGSLA+SFY
Sbjct: 200 VASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSFY 244


>gi|300310129|ref|YP_003774221.1| type III secretion HrcR
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  135 bits (341), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 126/207 (60%), Gaps = 9/207 (4%)

Query: 70  LLLTSLSFIPAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTLFVMGPVF 129
           +LL  ++ +P  ++  T F +I +VL +LR A+G Q  PPT  + G++L L++F+M P  
Sbjct: 13  VLLALMALVPLMVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALALSVFIMAPTV 72

Query: 130 DKI-----YVDAYQPFADNKISMIDAMEKGAAPLKEFMLK----QTRQSDLALYVKLSHS 180
            ++      VD   P A   + +++  +    PL++FMLK    + R+  LA   KL   
Sbjct: 73  QEVGKRAMAVDVSHPAASRTVPILERAQDAFDPLRKFMLKMSHAEQREMFLASAKKLWPK 132

Query: 181 PDLQGPEDVPLRLLIPAFITSELKTAFQISFAIFIPFLIIDMVVASILMSMGMMMMSPAI 240
              +  +     +LIPAF+ SEL+T ++I F I+IPF++ID++++++LM++GM  +SP  
Sbjct: 133 EAAKDAQPTDALILIPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLMALGMQQVSPQT 192

Query: 241 VSLPFKLMLFVLVDGWQLLIGSLAESF 267
           +++P KL+LF LV GW  L+ +LA S+
Sbjct: 193 ITIPLKLLLFTLVGGWAKLLNALAMSY 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 625,691
Number of extensions: 20668
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)