BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0054.p
         (420 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311370|ref|YP_003775462.1| flagellar hook-length control p...   251   6e-68

>gi|300311370|ref|YP_003775462.1| flagellar hook-length control
           protein [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  251 bits (642), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 199/457 (43%), Positives = 250/457 (54%), Gaps = 63/457 (13%)

Query: 1   MKTQLPILNV---ANLQNSARPATQADSFTADVPFNQVLNKEVSNRNAENQSK-----PS 52
           M T LP+LNV   +     AR A  ADSF+ADVPFNQVLN +VS RN +N S+       
Sbjct: 1   MNTSLPLLNVITGSQAATGARSANPADSFSADVPFNQVLNSQVSTRNQQNPSQDKPQAAQ 60

Query: 53  EAAKDKSPEPAKAAPAPTASTAPKSDADKTASSDDKKTDDQAADDASAATDAASTQQMLA 112
           E       +P ++A +  AS A  S+  + ++ D+ K  D  A  ASA        ++LA
Sbjct: 61  EQQPAAPSQPTQSASSAKASAANGSEQKQDSAKDEDKDSDDTATQASA--------ELLA 112

Query: 113 LVTNMGQMIVQPPSR-KATDQDIDALASQKGKKPIGQIGAEAKTDLALADTQSEDKSKGK 171
           LV N+ Q  V+P +  K+   D D LA  K               L+LAD Q      GK
Sbjct: 113 LVANIAQNAVKPVTDGKSEHTDADLLAQAK----------RGGASLSLADEQQALAGDGK 162

Query: 172 NNLLDLAALQDS---EKDAADGKSA-----------LPTRAT------------TEKSQA 205
           +  +DLA LQ S    K   DG +A            PT A             +EK+QA
Sbjct: 163 DGKIDLAGLQSSLAANKGKQDGAAADLARKANAAEANPTDAHAAKGEKPAVDLGSEKAQA 222

Query: 206 ESPVSAKSFQADLQDSAAAARNAKVAPEVNLKSIETPVQPTAATVVPALQQAMSLSQ-QA 264
            S   A +     Q   A       A +   ++  TPV      V+PA+QQA++ +Q QA
Sbjct: 223 LSKEDASTLANRAQYGKATTETVATAKQELPQATPTPV------VMPAMQQALAANQTQA 276

Query: 265 AMSGQAVQRLTPAVGSQGWDQAVGQKVLWMVNGGLQSASLTLNPPDLGPLQVVLHVNNQQ 324
                   ++ P VGS GWDQAVG K+ WM  GG+QSASLTLNPPDLGP+QVVL+V+NQQ
Sbjct: 277 VFGTTYTDKIQPNVGSAGWDQAVGNKITWMATGGIQSASLTLNPPDLGPMQVVLNVHNQQ 336

Query: 325 ADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQATVNTGNP-NQQQGANQQQQARST 383
           ADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQATVNTG P  QQ     QQQARS+
Sbjct: 337 ADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQATVNTGMPNQQQGANGGQQQARSS 396

Query: 384 SGNASSFGGRDNETDVNVAVVPRPVARGGQGLVDTFA 420
           SG   +  G++ + ++ +          G GLVDTFA
Sbjct: 397 SGAGGA--GQEQDGEIAITGAATATTTSGLGLVDTFA 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.305    0.119    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 866,443
Number of extensions: 28047
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,203,190
Effective search space: 399459080
Effective search space used: 399459080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 132 (55.5 bits)