BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0051.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311373|ref|YP_003775465.1| flagellar assembly protein FliH...   290   1e-79

>gi|300311373|ref|YP_003775465.1| flagellar assembly protein FliH
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  290 bits (741), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/232 (66%), Positives = 187/232 (80%), Gaps = 3/232 (1%)

Query: 4   RNNIIPKEQMTPYQRWEMASFDEPQEEIPPPEEQFAEEIPPP---PSLTLEEVDAIREQA 60
           R  IIPKE+MTPYQRWE+ASF +  E  P P  +  E +  P   P LT E++DAIRE A
Sbjct: 2   RAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTAEQLDAIREAA 61

Query: 61  RQEGYAEGQQQGLQAGRAEGYMAGLQQGQTEVNETIQHLRQIAVSFGTEVSQTSETMAPE 120
           RQEG+AEG++ GLQAGR+EGYMAGLQQGQ E+NE IQH RQIAV+F TEVSQ SE MAPE
Sbjct: 62  RQEGFAEGREHGLQAGRSEGYMAGLQQGQQEINEVIQHFRQIAVNFSTEVSQCSEKMAPE 121

Query: 121 LLNLGLDISKAMIKTALNVKPELILPTISAAIHSLPGLQLPALLYLQPDDAALVREHLGE 180
           LL+L LD++K+M+KTAL  +PEL+LPT+SAAI +LP LQLPA L L P+DAALVR+HLGE
Sbjct: 122 LLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLGE 181

Query: 181 ELSRNGWRLVEDPELQRGGCRMETGTNQVDATVQTRWRRIAESLSKQLDWLE 232
           EL++ GW++ ED  L RGGC++ET TNQ+DAT  TRW+R+ ESLSKQLDWLE
Sbjct: 182 ELTQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWLE 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.130    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 571,420
Number of extensions: 17981
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)