BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0049.p
         (568 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059...   823   0.0  

>gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059
           [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/566 (76%), Positives = 489/566 (86%), Gaps = 33/566 (5%)

Query: 35  EPPRNGVVRYAQSPQGRRVVLMVAAAAVIALMIGIWMWSQKTEYRVLFSNFSDRDGGAIV 94
           +P +NG++ YA+SPQG+R++L++AAAA +A+M GIW+WSQK EYRVLFSNF+DRDGGAIV
Sbjct: 5   QPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDGGAIV 64

Query: 95  ARX------YKYSEGGSAILVPETMVHDARLKLASQGLPKGGNVGFELMENQKLGVSQFL 148
           A        YKYS+GG+AILVPE MVHDARLKLA+QGLPKGGNVGFELMENQKLG+SQFL
Sbjct: 65  ASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGISQFL 124

Query: 149 EQVNFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLD 208
           EQVNFQRALEGELARS+ SL++VQ AR+HLALPKASVFVRDQQKPTASV+LSLYPGR LD
Sbjct: 125 EQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPGRYLD 184

Query: 209 PQQVSAIVHLVASSVPELSPKSVTIVDQNGNLLSDTTKQP-ANGLDPTQLKYVQDLQQDI 267
           PQQVSAIVHLVASSVPELSPK+VTIVDQNGNLLSDTTKQ   N LDPTQLKYVQD+QQDI
Sbjct: 185 PQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDMQQDI 244

Query: 268 IKRVESIIAPIVGTGNVRAEATADVDFSRSEQAAETYKPNQTADTAAVRSKQSSESQNGN 327
           +KRVESIIAPIVG GNVRAEATADVDFSRSEQA+E YKPNQT D+AAVRSKQSSE+ + +
Sbjct: 245 VKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEANSAS 304

Query: 328 SSTSGIPGALTNQPPAXGT-----------------AAAP------ATSSGTSHKDATIN 364
           + TSG+PGAL+NQPPA  T                 AA P       T++G S KD TIN
Sbjct: 305 NGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKDETIN 364

Query: 365 YEVDKTVRYVQQPMGGVKRLTVAVVVNYKRTTDQTGKVVMKPLTEAERNQISDLVKEAMG 424
           YEVDKTVRY QQPMGGV+RLTVAVVVNYKRT D TGK+VM+PLTEAERNQI+DLVKEAMG
Sbjct: 365 YEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVKEAMG 424

Query: 425 FNKDRGDSLNVVNTQFSSEMEPELPLWKQPDMIQLAKEIGKYVLLAAVLLYLYFGVLRPI 484
           +NKDRGDSLNVVNTQFS++MEPE+PLWKQP MI LAKEIGKYVL+AAVLL+LYF VLRPI
Sbjct: 425 YNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRVLRPI 484

Query: 485 IWKLSGREERE--AKERAEAEAKAAAEAAAAMYDPDNPDAIVELSPEAAEADARSEYKKN 542
           +WKLSGREERE  AKE+AEAEA AAA A AA +DPD+PDAIV LS E +E D R++YK N
Sbjct: 485 VWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGE-SEVDERAQYKAN 543

Query: 543 LESVKQLAKSDPKLVASIIKAWVNNE 568
           LE+ KQ AK+DPKLVASIIK+WVNNE
Sbjct: 544 LETAKQWAKNDPKLVASIIKSWVNNE 569


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.126    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,423,231
Number of extensions: 49490
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 478
Effective length of database: 1,193,720
Effective search space: 570598160
Effective search space used: 570598160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 133 (55.8 bits)