BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0045.p
         (95 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311379|ref|YP_003775471.1| flagellar biosynthetic protein ...   164   2e-42
gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB tra...    53   4e-09

>gi|300311379|ref|YP_003775471.1| flagellar biosynthetic protein
          [Herbaspirillum seropedicae SmR1]
          Length = 114

 Score =  164 bits (414), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/93 (86%), Positives = 86/93 (92%)

Query: 1  MNKPKLPFQNAVALAYNTNQAAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLMQ 60
          M KP +P QNAVALAYN +QAAP+VVAKG GLVAEAIIARARESGV+VHESKELVSLLMQ
Sbjct: 1  MEKPNIPLQNAVALAYNASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQ 60

Query: 61 VDLDQQIPPALYRAVAELLAWLYRIENMQLDRS 93
          V+LDQQIPPALYR VAELLAWLYRIENMQL+ S
Sbjct: 61 VELDQQIPPALYRTVAELLAWLYRIENMQLNSS 93


>gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score = 53.1 bits (126), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 7   PFQNAVALAYNTNQ-AAPKVVAKGSGLVAEAIIARARESGVFVHESKELV-SLLMQVDLD 64
           P   AVAL Y+  +  APKVVAKGS  +A  I   ARE  V + E+  L  +L    ++ 
Sbjct: 270 PTHYAVALKYSEGKMGAPKVVAKGSDEIAAKIRELAREHRVPLLEAPPLARALHTHTEIG 329

Query: 65  QQIPPALYRAVAELLAWLYRIEN 87
            +IP ALY AVAE+LA+++++  
Sbjct: 330 DEIPEALYTAVAEVLAYVFQLRT 352


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 267,235
Number of extensions: 8666
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 95
Length of database: 1,619,870
Length adjustment: 64
Effective length of query: 31
Effective length of database: 1,316,830
Effective search space: 40821730
Effective search space used: 40821730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)