BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0044.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311380|ref|YP_003775472.1| hypothetical protein Hsero_2064...   380   e-106

>gi|300311380|ref|YP_003775472.1| hypothetical protein Hsero_2064
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/347 (55%), Positives = 252/347 (72%), Gaps = 8/347 (2%)

Query: 38  LQAKVLSTYNDGTYLVRIANTAARMVLPTSTRTGDTLQLTMVGKDPRPTFLLTESSRGEA 97
           +  ++LS ++DGT+LVRIANTAARMVLP + + GD L LT+V KDPRPTF + E S    
Sbjct: 1   MSGRILSNFSDGTFLVRIANTAARMVLPNNAKVGDALVLTLVSKDPRPTFSVNEGSI--R 58

Query: 98  EDGDSTEVSLSTAGRAMEKDMKSLKAAQQ---GLTNIVTRDNQLEEGDAKNAAPSQL-AP 153
            D +S  V+LS AGRAM+KD+KSL+   +   G   I   ++   +  AK A P Q  AP
Sbjct: 59  PDEESASVALSNAGRAMQKDLKSLQFVTRDDAGAGQIAQNEDIAADAQAKGARPGQTGAP 118

Query: 154 ESTKTSLSSAGKLVDALLHASEESDLPSAIKPGSPLVANPNNTP-QLAGALRDSVALSGA 212
            ST T+LS+A +L+D+LLHAS++ D+   +   +PL+      P Q+AGAL+D++A SG 
Sbjct: 119 ASTTTTLSNAARLIDSLLHASQQGDMADHVSAPAPLLPRAGLPPEQMAGALKDAIAYSGV 178

Query: 213 FYESHVAEWADGKRPMTELLKEPQAQLGQQTQSGVSSLLNTTDPANTQLGQLINLQLNAL 272
           FYESHV+ WA G+RP  ELL+EPQAQ+  +   G  +LL+  DPA  QLGQ+INLQLNAL
Sbjct: 179 FYESHVSAWAAGQRPAEELLREPQAQVAAK-HGGEINLLSQNDPAQNQLGQIINLQLNAL 237

Query: 273 EQQRIVWHGEVWPGQQMEWEINRDSPDQQQQNTLEDEHAPSWHSVVRFNFEHLGSVSASI 332
           EQQR++WHGEVWPGQ+M+WEI+++   Q+     +DE  PSWHSVVRF+F HLG VSASI
Sbjct: 238 EQQRVLWHGEVWPGQKMDWEISQEHGQQESNAQADDEAPPSWHSVVRFDFAHLGGVSASI 297

Query: 333 RLIGQQIHMQVRTDNDVTAAALRANGSMLADSMEAAGSSLDSLIVKR 379
           RLIGQQIH+QV+ DN+ TAAALR N S+ AD+M AAG+SLDSLIVK+
Sbjct: 298 RLIGQQIHVQVKADNESTAAALRGNSSLFADAMAAAGTSLDSLIVKQ 344


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.123    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,171,329
Number of extensions: 47912
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 131 (55.1 bits)