BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0041.p (689 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 pro... 901 0.0 gi|300310454|ref|YP_003774546.1| flagellar hook-associated prote... 856 0.0 gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herb... 675 0.0 >gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/693 (69%), Positives = 578/693 (83%), Gaps = 11/693 (1%) Query: 1 MATSTGTISTSAGPLDVATLVSKLMGAEAKV-LDPLTSQASSYNSLISAYGNLKNSVSTY 59 MATSTGTISTSAGPLDVATLVS+L+ AE++ L PLT+QASSYN+LISAYG+LK+++STY Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 60 QNALKALTAASFAAQKSSVSNSGTGTPLTTDPFTADVNTDDSTKVLAQKIQSAGYPSSQQ 119 Q+A+KA+T+ASF+AQKSSVSN+GTG+ LTTDPF+AD+N DDSTK+LAQKIQSAG S Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 Query: 120 FTAGDSVAIKIGTNPPTFVTLQANATLAGVRDAINAAKAGVTASIVTDGTGDHLVMESNT 179 F AGDS+AIKIGTN P FVTLQAN+TLAGVRDAINA K G TASIVTDG GDHLV+ESNT Sbjct: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 Query: 180 AGTANTIKVQANNSLADLAYDPSSSNPSTVTQIQAPRDATAAASGTYSVSVSQLAQAQKI 239 GTANTIKV ANNSL+ YDPSSS PST+TQ QAPRDAT AASG Y+V+VSQLAQA+K+ Sbjct: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 Query: 240 TSTGFAAGYSFDTGILAIKTGTGSTAIIKPATNTLAGVRDAINASDAGVSATIVSDGTAA 299 +S A G +FD G+LAIKTG+GST IIKP TNTLAGVRDAIN+SDAGV+ATIVSDGT Sbjct: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 Query: 300 HLVLTAKDSGSANSIRVTGTGSYSALTFDPSGQYSSAGVATGQTYDAGTGTLTLKVGNTT 359 HLV+TAK+SGS N+I++TGT +++ DPSG +S VA+GQTY A G LTLKVG+++ Sbjct: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSA--GNLTLKVGDSS 358 Query: 360 TNIA--LSGTGKI-LKDVRDAINNATAGVTASITNDGTQDHLVLTPSGTGATSPVSLTGT 416 NIA +G+G I L V+ AINNA AGVTASITNDG+ DHLVLTP+G+ AT+ VSLTGT Sbjct: 359 FNIAPVANGSGNIDLTQVKLAINNANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGT 418 Query: 417 GDFANLSGSTMGQLQAAQDAKLSIDGTLVTSPSNTVKDAISGVTLNLTKVTTAADNFSLT 476 D+A LS S MGQL AQDAKLSIDG VTSP+N V++ ISGVTLNL+KVTT+ADNF+L Sbjct: 419 SDYAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLN 478 Query: 477 ISNDTTGVTSTATTFVSAYNALAKSITDLTKQTPATTLGQAGTSSPLASESSVQSILTQL 536 ISNDT+G+T+ A +FV+AYN LAK++ +T QTP+TTLGQA TS+PLASESSVQ+I++QL Sbjct: 479 ISNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQL 538 Query: 537 RSALLGNVPGGSGISSLTDIGIGFQKDGTLALDATKLSTATTKNFAGIANLFTSTATTNA 596 R+ L V GG+GI++L+DIGI FQKDGTLALD+TKLSTA T NFAGIANLF A T+ Sbjct: 539 RNTLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLF---AGTDP 595 Query: 597 D--GTTTGTNGILTNVQKLVDGFLADGGIIDTKTKGLKASLKINTDRQTVINTRLTSLQD 654 D TT+ NGI+T +Q L+ L+D GII TKT GL+ASLKIN DRQT + +RL++L+D Sbjct: 596 DPTNTTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKD 655 Query: 655 QYTNQFNALNLTLASMAATQSYLTQQLANLPKA 687 YTNQFN LNLTL+SM +TQSYLTQQLANL K+ Sbjct: 656 AYTNQFNQLNLTLSSMQSTQSYLTQQLANLAKS 688 >gi|300310454|ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] Length = 676 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/692 (65%), Positives = 566/692 (81%), Gaps = 22/692 (3%) Query: 1 MATSTGTISTSAGPLDVATLVSKLMGAEAK-VLDPLTSQASSYNSLISAYGNLKNSVSTY 59 MATSTGTISTSAGPLDVATLV++L+ E+K L PL ++ SS+N+LISAYG+LKN+ ++Y Sbjct: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 Query: 60 QNALKALTAASFAAQKSSVSNSGTGTPLTTDPFTADVNTDDSTKVLAQKIQSAGYPSSQQ 119 Q+ALK LTAASF+AQK+++SN+GTGT LTTDPFTAD NTD+STKVLAQK+QSAG+ + Q Sbjct: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 Query: 120 FTAGDSVAIKIGTNPPTFVTLQANATLAGVRDAINAAKAGVTASIVTDGTGDHLVMESNT 179 F AGDSVAIK+GTN PTF+TLQANATLAGVRDAINAAKAGVTASI TDG+GDHLV+ESNT Sbjct: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 Query: 180 AGTANTIKVQANNSLADLAYDPSSSNPSTVTQIQAPRDATAAASGTYSVSVSQLAQAQKI 239 GTANTIK+ ANNSL+ LAYDPSS+ STVTQIQAPRDA+ AA+G Y+++V+QLAQA K+ Sbjct: 181 GGTANTIKITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 Query: 240 TSTGFAAGYSFDTGILAIKTGTGSTAIIKPATNTLAGVRDAINASDAGVSATIVSDGTAA 299 +S G A G +FD G+LAIKTG GSTAII+P TN+LAGVRDAINASDAGV+A+IV+DGT Sbjct: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 Query: 300 HLVLTAKDSGSANSIRVTGTGSYSALTFDPSGQYSSAGVATGQTYDAGTGTLTLKVGNTT 359 HLVLTAKD+GSAN++RVTGTG+++A FDPSG ++ GVAT QTY + G+L L+VG+ + Sbjct: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSS--GSLALQVGSKS 358 Query: 360 TNIA---LSGTGKI-LKDVRDAINNATAGVTASITNDGTQDHLVLTPSGTGATSPVSLTG 415 I L G+G I L DV AIN+A GVTASITNDG++DHLVLTPSGT A V LTG Sbjct: 359 FTINPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPSGTDA---VKLTG 415 Query: 416 TGDFANLSGSTMGQLQAAQDAKLSIDGTLVTSPSNTVKDAISGVTLNLTKVTTAADNFSL 475 GD+++L+GS+MGQL AQDAKL++DG VTS SN V + ISGVTLNL+KVTT+ADNFSL Sbjct: 416 AGDYSDLAGSSMGQLAKAQDAKLTVDGVTVTSTSNKVTNVISGVTLNLSKVTTSADNFSL 475 Query: 476 TISNDTTGVTSTATTFVSAYNALAKSITDLTKQTPATTLGQAGTSSPLASESSVQSILTQ 535 +I+NDT+G+++ A TFV+AYN LAK++ +LTKQTP+TT GQA T SPLASESSV +++ Q Sbjct: 476 SINNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQ 535 Query: 536 LRSALLGNVPGGSGISSLTDIGIGFQKDGTLALDATKLSTATTKNFAGIANLFTSTATTN 595 +R+ +LG + G +G ++L+ IGI FQKDGTLALDATKL+ A K+F GI LFTS Sbjct: 536 VRNTMLGAL-GDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTS----- 589 Query: 596 ADGTTTGTNGILTNVQKLVDGFLADGGIIDTKTKGLKASLKINTDRQTVINTRLTSLQDQ 655 TNG++ +QKL+DG L + G++ +KTKGL+ SLKI TD+QT N RL L+D Sbjct: 590 ------ATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDT 643 Query: 656 YTNQFNALNLTLASMAATQSYLTQQLANLPKA 687 YTNQFN LN+TLA+M + QSYLTQQLA L K+ Sbjct: 644 YTNQFNRLNVTLATMQSRQSYLTQQLAKLSKS 675 >gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] Length = 680 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/697 (52%), Positives = 497/697 (71%), Gaps = 29/697 (4%) Query: 1 MATSTGTISTSAGPLDVATLVSKLMGAEAK-VLDPLTSQASSYNSLISAYGNLKNSVSTY 59 MATSTG+ISTSAGPLDVA LV++L+ E+K L PL S+A S+N+LISAYG L +++TY Sbjct: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 Query: 60 QNALKALTAASFAAQKSSVSNSGTGTPLTT--DPFTADVNTDDSTKVLAQKIQSAGYPSS 117 QNAL LTAA F+AQK++VSN+G + + D +AD+N+D STK AQ I+SAG+ S Sbjct: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINSDASTKAQAQIIKSAGFASG 120 Query: 118 QQFTAGDSVAIKIGTNPPTFVTLQANATLAGVRDAINAAKAGVTASIVTDGTGDHLVMES 177 F AGDSVAIK+G P F+TL+A+AT+ G+RD INAA+AGVTAS+V D GDHLV+ES Sbjct: 121 HLFKAGDSVAIKVGEASPHFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 Query: 178 NTAGTANTIKVQANNSLADLAYDPSSSNPSTVTQIQAPRDATAAASGTYSVSVSQLAQAQ 237 NTAGTAN +KV+ANNSL+ +++D S P +TQ QA RDAT+AA G+Y++SV QLAQ+ Sbjct: 181 NTAGTANLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 Query: 238 KITSTGFAAGYSFDTGILAIKTGTGSTAIIKPATNTLAGVRDAINASDAGVSATIVSDGT 297 K++S G A G +FD G+LAIK G+GST +IKPA+NTLAGVRDAINA+ AGV+A+IVSDG Sbjct: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 Query: 298 AAHLVLTAKDSGSANSIRVTGTGSYSALTFDPSGQYSSAGVATGQTYDAGTGTLTLKVGN 357 HLVLTAK+SG+ N++R++GTG ++ + DPSG S+A V + + G + L VG Sbjct: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFS--QGAVNLSVGA 358 Query: 358 TTTNI----ALSGTGKILKDVRDAINNATAGVTASITNDGTQD----HLVLTPSGTGATS 409 T ++ A +G L DV AIN A AGV+A++ +G D LVL+ SG + Sbjct: 359 RTISLKPASATAGAAPGLADVARAINEAKAGVSATVQREGQGDKAVERLVLSASG---SD 415 Query: 410 PVSLTGTGDFANLSGSTMGQLQAAQDAKLSIDGTLVTSPSNTVKDAISGVTLNLTKVTTA 469 PVSL G+GD+A L+ S MGQLQ QDA+LSIDG +T+ SNT+KDAISGVTLNL K T+A Sbjct: 416 PVSLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSA 475 Query: 470 ADNFSLTISNDTTGVTSTATTFVSAYNALAKSITDLTKQTPATTLGQAGTSSPLASESSV 529 D +L ISND++GV + +FV+A+N LAK++ ++T+Q PA GQAG LA ES V Sbjct: 476 TDKLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGLLAGESMV 535 Query: 530 QSILTQLRSALLGNVPGGSGISSLTDIGIGFQKDGTLALDATKLSTATTKNFAGIANLFT 589 +++ +LR+A+L ++P G+ + SLT IG+GF+KDGTL LD+ +L+ A +NF +A LF Sbjct: 536 RALTGELRNAVLASMP-GNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLF- 593 Query: 590 STATTNADGTTTGTNGILTNVQKLVDGFLADGGIIDTKTKGLKASLKINTDRQTVINTRL 649 G G++ + L+D L + G++ KT+GL+ SLKI +D+Q RL Sbjct: 594 -----------AGKEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARL 642 Query: 650 TSLQDQYTNQFNALNLTLASMAATQSYLTQQLANLPK 686 +L+D YTNQFN LN+TL+ M A+Q+YLTQQLA L + Sbjct: 643 ANLRDSYTNQFNRLNVTLSKMQASQNYLTQQLARLRR 679 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.307 0.121 0.317 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,788,518 Number of extensions: 71969 Number of successful extensions: 374 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 311 Number of HSP's successfully gapped: 5 Length of query: 689 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 597 Effective length of database: 1,184,250 Effective search space: 706997250 Effective search space used: 706997250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 134 (56.2 bits)